Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00311 ATGTCAACGAGCAGAAGCATTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCCAGTGATAACACATTTCTCAGATTAAACCATCTTGACATCCACGGTGATGATGCTGGATCACAGGGGGCAGTTGCtagcaaaaagaaaaagagaggccAACGTGCTGTTGCAGGTGACAAGAGTGGAAGAGGGCTCCGCCAGTTTAGTATGAAAGTATGTGAGAAGGTAGAAAGCAAAGGAAGAACCACTTATAATGAGGTAGCAGATGAACTTGTGGCCGAGTTTGCAGATCCAAACAATAGTGTTTCTTCTCCAGATCAGCAACAATATGATGAAAAGAATATCCGTCGAAGAGTTTATGATGCTTTGAATGTCCTCATGGCAATGGACATTATTTCTAaggataaaaaggaaatacaGTGGAAGGGTCTTCCTCATACTAGTCTGAATGATATTGAAGAATTAAAGACGGAGCGTCTTGGGCTTAGGAATAGGATTGAAAAGAAAGCAGCCTATCTACAAGAGCTGGAGGAGCAATACGTCGGTCTTCAGAACCTCATACAACGAAATGAGCAGTTGTATAATTCAGGCAATGCTCCCAGTGGAGGTGTGGCTTTACCTTTTATTCTGGTGCAGACACGCCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAACAGTACTCCTTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGTTGATAATACGGCACACAATCATACAGATGGTGGTGAAGGTTCTAGCATGTCAAGCTTGTATCAAGCTGAGGTTCCTCCATCTGGTTCAAACCCTCCTGCCACTGCCAGGCCTCCTACCTCACCACCACTCCCGGGAATATTGAAGGCTCGAGTTAAGCATGAGCACTA 950 0.4284 MSTSRSIGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVAGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPNNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPHTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLYNSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQVDNTAHNHTDGGEGSSMSSLYQAEVPPSGSNPPATARPPTSPPLPGILKARVKHEH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00311 316 CDD DP_DD 150 253 IPR014889 -
Bva07g00311 316 Gene3D Transcription factor DP 151 275 IPR038168 -
Bva07g00311 316 PANTHER TRANSCRIPTION FACTOR DP 4 316 IPR015648 GO:0005667|GO:0051726
Bva07g00311 316 PIRSF Txn_factor_DP 1 316 IPR015648 GO:0005667|GO:0051726
Bva07g00311 316 Pfam E2F/DP family winged-helix DNA-binding domain 65 145 IPR003316 GO:0005667|GO:0006355
Bva07g00311 316 MobiDBLite consensus disorder prediction 291 305 - -
Bva07g00311 316 Coils Coil 161 195 - -
Bva07g00311 316 SMART DP_2 152 314 IPR014889 -
Bva07g00311 316 SUPERFAMILY E2F-DP heterodimerization region 151 266 IPR037241 -
Bva07g00311 316 MobiDBLite consensus disorder prediction 1 63 - -
Bva07g00311 316 PANTHER TRANSCRIPTION FACTOR DP 4 316 - -
Bva07g00311 316 MobiDBLite consensus disorder prediction 265 289 - -
Bva07g00311 316 MobiDBLite consensus disorder prediction 1 27 - -
Bva07g00311 316 Pfam Transcription factor DP 153 276 IPR014889 -
Bva07g00311 316 Gene3D - 57 150 IPR036388 -
Bva07g00311 316 SUPERFAMILY "Winged helix" DNA-binding domain 65 146 IPR036390 -
Bva07g00311 316 MobiDBLite consensus disorder prediction 262 316 - -
Bva07g00311 316 SMART E2F_TDP_2 62 145 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00311 Bva-Chr7 4289513 4295529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00311 63 254 E2F-DP Transcription Factor Family AT5G02470 56.477 9.21e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva07g00311 DP 9.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00311 K04683 - qsu:112000390 565.844