Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00261 ATGGCAAGAATCAAGAAGCCCACTGGTCGCCGAAAGATCGAAATTAAGAAGATGAGCAAAGAAAGCAATCTCCAGGTGACCTTTTCTAAGCGTCGTGGtgggatttttaaaaaagccaGCGAACTTTGCACTCTTTGTGCAGCTGAGGTAGTTATCATCATCTTCTCTCCTGGGAACAAGGCCTTCTCTTTTGGCCATTCAAGCGTTAATGATGTGATTAATCGCTTGCTTGCTGGAACCCCATCACAAACCTCTGGTGCCATGCAGGCCATTGAGGCTCATCGCAATGCTAATGTGCTTAACCTCAATGCACAACTAACCCAGGTATCTGACCTCCTAGACACAGAGAAGAAGCTTAGCAGGGACCTAAACAAGCTGTTGAAGCCCACACAGGAACAATTTTGGTGGGCTGGTCCAATTGAAGAGATGAGCAAACCTCAACTCGAGCTCTTGAAGTCTGCCATGAAAGAGCTCCAAACGACCATCAATCTGCAAGCTAATATGATGCAGATTCAACGTTCTGACCCAGTTCAATTTTCTGCTAGCAGTTCTTCTGGCCCAGTTGCTCTGCAACCAACACCACAATCATTAATCCAACCACCGATTGTCCAAGGCAATTGCATGTTTGATGGGAACATGATGCCATTGCCACCAACTATCCATGGTTTCAGCAACATGGGTGGATTTGGTCCTGGATTTTCTGAATATGCTAAGATGAACTTTTG 725 0.4469 MARIKKPTGRRKIEIKKMSKESNLQVTFSKRRGGIFKKASELCTLCAAEVVIIIFSPGNKAFSFGHSSVNDVINRLLAGTPSQTSGAMQAIEAHRNANVLNLNAQLTQVSDLLDTEKKLSRDLNKLLKPTQEQFWWAGPIEEMSKPQLELLKSAMKELQTTINLQANMMQIQRSDPVQFSASSSSGPVALQPTPQSLIQPPIVQGNCMFDGNMMPLPPTIHGFSNMGGFGPGFSEYAKMNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00261 241 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 PANTHER MADS BOX PROTEIN 7 185 - -
Bva07g00261 241 MobiDBLite consensus disorder prediction 177 196 - -
Bva07g00261 241 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Bva07g00261 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva07g00261 241 CDD MADS_MEF2_like 9 75 IPR033896 GO:0000977|GO:0045944
Bva07g00261 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 185 - -
Bva07g00261 241 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Bva07g00261 241 Gene3D - 89 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00261 Bva-Chr7 3820526 3821251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00261 4 202 Type I MADS-box Gene Family AT5G60440 46.040 3.05e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00261 SRF-TF 9.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00261 - - pvy:116142990 213.386