Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00260 ATGGCAAAAATAGGAAGGCCACTGTCTGCtgaaagatcaaaatttaaCCTCCAGGTGACTTTTTCTAATCGTCGTAATGGTATTTTCAACAAAGCTAGCGAACTTTGCACTCTCTGTGCTGCTGAGGTAGCTATCATCACCTTCTCTCCAGGGAATCAGGTCTACTCTTTTGGACATTCAAGCGGTAATGATGTTATCAATCGAATTCTTACTGGAGCCCAACCACAAACCTCTAGTGCCAGGCAGGTCATTGAAGCTCATCACAATGCTATTGTGCGTAACCTCATTGCTCAACTAACTCAGTCATCTGAGTTGCTAGATGAGGAGAAGAAGCTTAGCAAGGACATGAACATGCTGTTGAAGCCCACACAGGGACAATTTTGGTGGGCTGGTCCAATTGACGAGATGAGCAAGCCTCAACTCTA 425 0.4376 MAKIGRPLSAERSKFNLQVTFSNRRNGIFNKASELCTLCAAEVAIITFSPGNQVYSFGHSSGNDVINRILTGAQPQTSSARQVIEAHHNAIVRNLIAQLTQSSELLDEEKKLSKDMNMLLKPTQGQFWWAGPIDEMSKPQL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00260 141 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 14 140 - -
Bva07g00260 141 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 57 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Bva07g00260 141 SUPERFAMILY SRF-like 13 73 IPR036879 GO:0003677|GO:0046983
Bva07g00260 141 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva07g00260 141 PANTHER MADS BOX PROTEIN 14 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00260 Bva-Chr7 3815109 3815534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00260 16 141 Type I MADS-box Gene Family AT5G60440 44.961 2.02e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00260 SRF-TF 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00260 - - minc:123226858 149.443