Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00257 atggagaggaAAAACCCTAGTCTCGATTGCACATATAATCCTCTCATATTGCTTCTTCTTCCCGATCCTAGTCTCGAAGACAGCCAGTCGAGTGGAAGCTTGCTTGCATCTACTGCCGCCGCTTCCACCCTTAATTACAGAgGACCGACAAAGATGGCTTACGCAGCAATGAAGCCGACTAAGCCGGGTTTGGAGGAGAGCCAGGAGCAGATTCACAAGATCAGGATCACCCTATCCTCCAAGCATGTGAAAAACCTTGAGAAGGTTTGTGCTGACTTGGTTCGTGGAGCCAAGGACAAAAGGCTCAGGGTCAAGGGACCAGTGAGAATGCCCACCAAGGTTCTTAACATCACAACAAGAAAATCACCTTGTGGTGAAGGGACCAACACATTTGACAGATTTGAGCTCCGGGTTCATAAGAGAGTGATTGATCTCTACAGCTCTCCAGATGTTGTTAAGCAGATTACCTCAATTACAATCGAACCAGGAGTTGAGGTTGAGGTCACAATTGCAGATGCCTG 521 0.4664 MERKNPSLDCTYNPLILLLLPDPSLEDSQSSGSLLASTAAASTLNYRGPTKMAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTFDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00257 173 PRINTS Ribosomal protein S10 family signature 130 144 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 PRINTS Ribosomal protein S10 family signature 73 86 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 PRINTS Ribosomal protein S10 family signature 108 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 PANTHER RIBOSOMAL PROTEIN S10-RELATED 52 172 - -
Bva07g00257 173 Gene3D Ribosomal protein S10 domain 54 172 IPR036838 -
Bva07g00257 173 TIGRFAM uS10_euk_arch: ribosomal protein uS10 72 170 IPR005729 GO:0003735|GO:0006412|GO:0015935
Bva07g00257 173 Hamap 30S ribosomal protein S10 [rpsJ]. 71 170 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 52 172 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 Pfam Ribosomal protein S10p/S20e 75 169 IPR027486 -
Bva07g00257 173 ProSitePatterns Ribosomal protein S10 signature. 97 112 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva07g00257 173 SMART Ribosomal_S10_2 75 169 IPR027486 -
Bva07g00257 173 SUPERFAMILY Ribosomal protein S10 73 170 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00257 Bva-Chr7 3762428 3764887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00257 52 173 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 89.344 1.18e-76 223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00257 07 3762428 3764887 Bva07g00257 07 3762428 3764887 ECH