Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00246 ATGGATTCACATCATCGGTACAGACTTGTTGCTTTAAggattttttatgaaatatttaccGTTCTTGTCTATTTGCATATATTATCGCTATCCCTATTTCTGCCAGGAATTGCTGTTTTAACATCATGTGGCCTAGGGTCATATATAGGTACCATATTTTCAGGTTTATTGGTTGGGTTCTTAGTGTGTATTTGTCTTGGAACAATAACTGCCAATAAGATCAATGAGATTGAGAATGCAATTGAGAATGCTCAAAGTCAACCATCTGATCAGAGTCATGAGATAAACAGAAGGGTTCAACTTGAACCTCAAATGGCTGAGAGGAGAGAGCATAGTGAAAGTTCGGCGGCACGGTCCTTTAGTACTCCAGCGGTTGCTAGGGCTTTTGCATCCTTGCTTGTTTTGCCGCCGTGGAAAATCTTCAAGAGTAGAGAGAgcaattatcaaattatagGATCCCATGACGAGTGTGGGATTTGCTTGGAAGAATTCAGGAACGGGGACTTGATCCAATCTTTTCCCATGTGTAGCCATGATTTCCATTTGGCTTGCATCAATACTTGGTTACAAGGTGGAAGCATTACTTGCCCTAATTGTCGTTCTTCTCTGCAGGGTAAATGGGAGAGTTTATTATA 635 0.3906 MDSHHRYRLVALRIFYEIFTVLVYLHILSLSLFLPGIAVLTSCGLGSYIGTIFSGLLVGFLVCICLGTITANKINEIENAIENAQSQPSDQSHEINRRVQLEPQMAERREHSESSAARSFSTPAVARAFASLLVLPPWKIFKSRESNYQIIGSHDECGICLEEFRNGDLIQSFPMCSHDFHLACINTWLQGGSITCPNCRSSLQGKWESLL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00246 211 Pfam Ring finger domain 155 200 IPR001841 -
Bva07g00246 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Bva07g00246 211 CDD RING-H2 157 200 - -
Bva07g00246 211 SMART ring_2 157 199 IPR001841 -
Bva07g00246 211 SUPERFAMILY RING/U-box 156 204 - -
Bva07g00246 211 ProSiteProfiles Zinc finger RING-type profile. 157 200 IPR001841 -
Bva07g00246 211 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 205 IPR044675 -
Bva07g00246 211 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00246 Bva-Chr7 3640276 3640911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00246 98 203 C3H Transcription Factor Family AT5G47610 33.019 1.75e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00246 - K19040 aprc:113865236 78.5666