Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00235 ATGGCAAGAATCAGGAGGAACGCTGGTCGCCGAAAGATTCAAATTCAGAAGATAAGCAAGGAAAACAATCTCCAAGTGACCTTTTCTAAGCGTCGCACAGGCATTTTCAAGAAGGCCAGCGAACTATGCACGCTTTGTGCAGCTCAAATAGctatcattattttctctcccGGGAAGAAGGCCTTCTCTTTTGGCCACCCCGGTGTTAATGATTTGATCAATCTCTTGCTTCATGGAGCCCCACAACAGACCACTGAGGAGGCTCTTCGCAACCACTTCACTGAGGCTCTTTGCAATGCCAACTTGCGAAACCTCAATGCAGATTTAACTCAATCCTCTAATCTACTCGACGTGCTGATGAAACGCAGGGCAGAGTTGAATAAGCTGCTTAAGCCAGTACTGGAGCAATTTTGGTGGGCTGGTCCAATTGAGGATATGAACAAGCCTCAGCTGGAGTTCTTGATGTCAACCATGGAAGAGCTGAACCGCAACATCACTCTTCAAGCTGATACATTAAGGTTTCTCAGTTCTGATCCATCTCAGCTTTTGGCTGGTAGTTCATCTAGCACATTTTCTCATCAAACACTGTCGCAATTGTTGTTTCAACCACCTGTTGTGCCGGCCAATCACATGATTGATGGGAACATAATTCCTCAACCACCTGCTAGCCATGGTTTGAGCAGATTTggaggatttggtccatg 704 0.4375 MARIRRNAGRRKIQIQKISKENNLQVTFSKRRTGIFKKASELCTLCAAQIAIIIFSPGKKAFSFGHPGVNDLINLLLHGAPQQTTEEALRNHFTEALCNANLRNLNADLTQSSNLLDVLMKRRAELNKLLKPVLEQFWWAGPIEDMNKPQLEFLMSTMEELNRNITLQADTLRFLSSDPSQLLAGSSSSTFSHQTLSQLLFQPPVVPANHMIDGNIIPQPPASHGLSRFGGFGP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00235 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva07g00235 234 Gene3D - 20 93 IPR036879 GO:0003677|GO:0046983
Bva07g00235 234 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Bva07g00235 234 Coils Coil 102 122 - -
Bva07g00235 234 CDD MADS_MEF2_like 9 73 IPR033896 GO:0000977|GO:0045944
Bva07g00235 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 172 - -
Bva07g00235 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva07g00235 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva07g00235 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva07g00235 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva07g00235 234 PANTHER MADS BOX PROTEIN 7 172 - -
Bva07g00235 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00235 Bva-Chr7 3558169 3558873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00235 4 190 Type I MADS-box Gene Family AT5G60440 40.314 1.56e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00235 SRF-TF 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00235 - - pper:18768967 172.17