Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00234 ATGTTGGCTTGGTCCAGTTTCAGCCATGGCAAGAATCAAGAGGATCCCTGGCGCCGAAAGATTGAAATTAAGAAGATAACCAAGAGAAACAATCTTCAAGTGACCTTTTCCAAACGTCGCACAGGCATTTTCAAGAAGGCCAGCGAACTGTGCACGCTTTGTGCAGCTCAACTAGCTATCATTATATTCTCCCCTGGGAACAAGGTCTTCACTTTTGGCCATCCCAGTATTAGTGATTTGGTTAATCTCTTGCTTAATGGAGCCCCAGCACAGACCATTGAGGAGGCTCTTGGCAACAACTTCACTGAGGTTCTTCGTAATGTCAACTTGCGAAACCTCAATGCAGAGTTAACTCAATTATCTTCCGTACTTGACATGGTGAAGAAACGTTGCACAGAGATGAACAAGCAGCTAAAGGCAGCACTGGAGCAATTTTGGTGGGCTGGTCCAATTGAGGAGATGAACAAGCCTCAGCTTGAGTTCTTGATGTCCACTATGGAAGAGCTGAACATGAACATTACTCTTCAAGCTGATACATTACGGATTTTGTGTTCTAATCCATCTCAGATTTTGGCTGGTAGTTCATCTAGCCCAATTGCTCCACAAACAGTATCACAATTGTTATTTCAACCACCACTTGTTCCGGCTAATCGCGTGATTGATGGGAACATAATTCCACCACCCCCTGCTAACCATGGTTTGAGCGGCTTtggaggatttggtccaagaaattATTG 737 0.4315 MLAWSSFSHGKNQEDPWRRKIEIKKITKRNNLQVTFSKRRTGIFKKASELCTLCAAQLAIIIFSPGNKVFTFGHPSISDLVNLLLNGAPAQTIEEALGNNFTEVLRNVNLRNLNAELTQLSSVLDMVKKRCTEMNKQLKAALEQFWWAGPIEEMNKPQLEFLMSTMEELNMNITLQADTLRILCSNPSQILAGSSSSPIAPQTVSQLLFQPPLVPANRVIDGNIIPPPPANHGLSGFGGFGPRNY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00234 245 Coils Coil 110 144 - -
Bva07g00234 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 Gene3D - 99 193 - -
Bva07g00234 245 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 SUPERFAMILY SRF-like 18 86 IPR036879 GO:0003677|GO:0046983
Bva07g00234 245 PANTHER MADS BOX PROTEIN 15 190 - -
Bva07g00234 245 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Bva07g00234 245 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Bva07g00234 245 CDD MADS_MEF2_like 18 81 IPR033896 GO:0000977|GO:0045944
Bva07g00234 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 15 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00234 Bva-Chr7 3546784 3552067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00234 18 200 Type I MADS-box Gene Family AT5G60440 42.473 3.74e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00234 SRF-TF 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00234 - - cit:102622898 176.407