Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00233 ATGGCAAGACTCAGGAGATACGTTGGCCGCAGAAAggttgaaataaagaagataACCAAGGAAAACAATCTTCAAGTGACTTATTCTAAGCGTCGCACTGGCATTTTCAAGAAAGCCCACGAGCTGTGCACGCTTTGCGCCGCTAAAGTGGCGATCATAATCTTCTCCCCGGGGAAAAAGGTCTTCTCATTTGGCCACCCCGGCGTTAATGATTTGGTAAATCTCTTGTTTAATGGAGCCCCATCACAGACCACTGCGGAGGCTCTTTGCAACCACTTTAATGAGGCTCTTCGCAATGCCAACTTGCGAAACCTCAATGAAGAGTTAACTCAATCCTCTGACCTACTCGACATGGcgaagaaaaatagaacagAGTTGAACAATCAGCTCAGGCCAGCGCTGGAGCAATTCTGGTGGGCTGGTCCTGTTGAGGAGATGAACAAGCCTCAGCTGGAATTCTTGATGTCCACCATGGAGGAGCTGAACAGGAATATCACTCTTCAAGCTGAAAGATTACGGATTCTATTTTCCAATCCATCTCAGGTTTTGGTGGGAAGTTCATCTAGCCCGATTGTTCCACTGACAGCATCGCAGCTGTTTTTCCATCCACCAGTTGTGCCAGCCAATCACGTGATTGATGGGAACGTAATTCCAACACCACCTTCGAGCCATGGTTTTAGCAGCCTAGGAGGATTTCTTGGTCCATG 707 0.4583 MARLRRYVGRRKVEIKKITKENNLQVTYSKRRTGIFKKAHELCTLCAAKVAIIIFSPGKKVFSFGHPGVNDLVNLLFNGAPSQTTAEALCNHFNEALRNANLRNLNEELTQSSDLLDMAKKNRTELNNQLRPALEQFWWAGPVEEMNKPQLEFLMSTMEELNRNITLQAERLRILFSNPSQVLVGSSSSPIVPLTASQLFFHPPVVPANHVIDGNVIPTPPSSHGFSSLGGFLGP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00233 235 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Bva07g00233 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 CDD MADS_MEF2_like 9 73 IPR033896 GO:0000977|GO:0045944
Bva07g00233 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva07g00233 235 Gene3D - 91 183 - -
Bva07g00233 235 Coils Coil 102 129 - -
Bva07g00233 235 Coils Coil 151 171 - -
Bva07g00233 235 SUPERFAMILY SRF-like 9 78 IPR036879 GO:0003677|GO:0046983
Bva07g00233 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Bva07g00233 235 PANTHER MADS BOX PROTEIN 7 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00233 Bva-Chr7 3540349 3541056 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00233 4 189 Type I MADS-box Gene Family AT5G60440 42.408 1.32e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00233 SRF-TF 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00233 - - pper:18768967 174.096