Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00230 ATGGCCAATAAATTGACCCTTCTCTGTAGTAGCACATCACCAAAATTAAACACCAGCTGCAGAAAGATTGAAATTAAGAAGATAAGCAAGGAAAATAATCTTCAAGTGACTTTCTCCAAACGTCGTATtggcatttttaaaaaagccaGCGAGCTATGTACGCTTTGTGCAGCTAAAGTTGCTATTATAATCTTCTCTCCTGGGAATAAAGTCTTCTCTTTTGGCCCTCCCAGTGTCAACGATCTGGTCAATTTCTTGCTTACTGGAGCCCAAGCACAGACCACCGAGGAGGAGGCTCTTCGCAATAACTTCACTGAGTCTCTTTGCGATGTCAACTTGCGAAACGTCAATGCAGAGTTAACTCAATTCTGTGATGTACTCGACATGTTGAAGAAACATAACACAGAGTTGAACAAGCCTGAGTTGGAGTTCTTGATGTCCACCATGGAAGAGTTGAACAGGAACATCACTCTTCAAGCTCATAAATTGCGGATGCTGGGTTCTAACTCATCTCAGTTTTTGCTGGTAGTTCGTCTAGCTTGGTTGCTCAGCAAACAGCATTGCAACCATTGTTTCAACCATCAGTTGTGCCGGCCAATCAGATGCTTGATTGGAACATG 620 0.4161 MANKLTLLCSSTSPKLNTSCRKIEIKKISKENNLQVTFSKRRIGIFKKASELCTLCAAKVAIIIFSPGNKVFSFGPPSVNDLVNFLLTGAQAQTTEEEALRNNFTESLCDVNLRNVNAELTQFCDVLDMLKKHNTELNKPELEFLMSTMEELNRNITLQAHKLRMLGSNSSQFLLVVRLAWLLSKQHCNHCFNHQLCRPIRCLIGT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00230 206 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Bva07g00230 206 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Bva07g00230 206 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Bva07g00230 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Bva07g00230 206 PANTHER MADS BOX PROTEIN 20 158 - -
Bva07g00230 206 SUPERFAMILY SRF-like 21 87 IPR036879 GO:0003677|GO:0046983
Bva07g00230 206 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Bva07g00230 206 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 20 158 - -
Bva07g00230 206 Gene3D - 31 101 IPR036879 GO:0003677|GO:0046983
Bva07g00230 206 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00230 Bva-Chr7 3512123 3512743 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00230 21 139 Type I MADS-box Gene Family AT5G60440 45.378 2.70e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g00230 SRF-TF 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00230 - - sly:101252829 125.561