Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00223 atgacTCCAGCTAATTTGGCATCCCAGTTTGGTGACACCACATACACCAAGGTGTTTGTTGGAGGGTTGGCTTGGGAGACCCAGAAAGAGACCATGAAGAAGTATTTTGAACAGTTCGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGATTTGTAACTTTTCGCGAGCCCGAAGCCGCCATGAGAGCATGTGTTGATGCAGCTCCTGTAATAGATGGTAGGAGGGCTAATTGTAACCTTGCTTCTCAGGGTGTTCAGAGATCTAAGCCTTCAACCCCAAAGCATGgAGGAGCAGGAAGGAACTTTAGGGTAATGGGTTCTTTCCAAACAGGGTTTGGAGCAGGAGTAGGATCAGCTTTTGCTTCTACAGCAACCTTCCCTCATTATGCTATCCAACAAGGGATACCTTATAATGTCTATagGTATTCTCCATACTCGCAGGACTACACTTACCCTACGAGCTACTATAGTGTGTATGGAGCAGGAACAGGTCAGTACCCACTGTATGGAACCGGACCAGGAGGAATGATGACTGGGGCTGCAACAGCCACAGCATTTTACCCATATCTACAGTTTGGAGAAGGGAGTGGTGGCGCCGCCGCCACCGGTGGCTACACTTCTGGGCAGGGTTACAGCGTCAACTACCCGCCGCAGCTGTTTCAGTATTCTCCCATTACCTCCACTGCAGGGTATGCACAGCACTATGGTGCACCCATGTCTCTTGCACCTTCGCCTGCCATGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCGCATCGTTA 818 0.4939 MTPANLASQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASQGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGAGVGSAFASTATFPHYAIQQGIPYNVYRYSPYSQDYTYPTSYYSVYGAGTGQYPLYGTGPGGMMTGAATATAFYPYLQFGEGSGGAAATGGYTSGQGYSVNYPPQLFQYSPITSTAGYAQHYGAPMSLAPSPAMQSVCFAVSQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00223 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bva07g00223 267 PANTHER OS01G0876800 PROTEIN 1 263 - -
Bva07g00223 267 PANTHER BOULE-RELATED 1 263 IPR037366 GO:0003729
Bva07g00223 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bva07g00223 267 CDD RRM_RBM24_RBM38_like 16 91 - -
Bva07g00223 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Bva07g00223 267 SUPERFAMILY RNA-binding domain, RBD 11 112 IPR035979 GO:0003676
Bva07g00223 267 Gene3D - 3 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00223 Bva-Chr7 3413692 3418424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00223 1 93 C2H2 Transcription Factor Family AT2G19380 40.860 6.29e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00223 - - vvi:100241327 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00223 07 3413692 3418424 Bva07g00223 07 3413692 3418424 ECH