LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva07g00171	ATGGCAAAAGAATCCAGTGAACGATCAACCACTAAACCTGTGACAGCATCATTATCAAAGACGATGGTGACCAATGCAAAATTTGacgtggagaagtttgacggCACCAATAACTTTGGCATGTGGCAATGTGAAGTGTTGGATATACTATACCAACAAGAACTTGATTTCGCACTGGAAGAAGAGAAGCCAGATGACATTGAAGAAAAGGATTGGACAAGAATCAATCGTTTGGCATGTGGTACAATTCGGCTGTGTCTTTCCAAGGAGCAAAAATACCCGTTTATGAGAGAGACATCTGCACACAAGCTGTGGAAGGAACTGAATAAGCTCTACATGAGAACGAAGTTATACCGCTTCCAGTATTTACCAGGTACCACCATGAATAAACACATCACTAGATTTGATTCCTTAGTTACTGATTTGTTGAATCTAGATGAAAATATCAATGATACTGATAAGGCTTTGATATTGTTAGCTTCACTCCCTGATGAATATGAACATCTTATTGTTAGTATGTTGGCtggaaaagaaactataacCTTTAAAGAAGTTACTACAGCTTTGTATTCTAACGAGATAAGGAAGAAAGATAAGCTAGAACATAAAAGCTCTGCTGGTGAAGCTCACACCGTTCGAGGTCGTAGTCAAAGCCATAAGCCAAGTAGAAGAGGCAGATCTCGATCAAAAGGCAAAGTAGCAAAAGATGAATGTGCTTTTTGTCACGAGAAAGGCCACTGGAAGAAAGACTGCCCAAAgctacaaaagaagaaagggaaggCTGTAGCAAAAGCATGTTTAGCTGAAAATGACGAGTCAGACTATTCTTTGTCTTGTGTCTCAACAGAGACTTGTACTGATGAATGGTTGCTTGACTCAGGATGCTCATTCCATATGTGTTCCAGAAAGGAGTGGttcttcaactttgaagaaattgatgGCGGAGCTGTTTATCTAGCCGACAACCAATCTCACAAAATAGCTGGGTTTGGCTCAATCTACTTGAAGAACCATGATGGGTCAACCAGAGCATTGACAGATGTTCGGTACATTCCGAAGTTTGCAAAGAATCTCATATCCTTGGGAGCCTTAGAATCAAAAGGTTTCACCATCAATATGCAAAACGGGATTCTAAAAGTAATTTCAAGAGCACTTGTGGTGATGAAAGGTGTCAGAAAAAATAATCTGTACCATTATCAAGGCAGCACAGCAGTTGGCATAGCAGCAGCGGCAGTAGAAGCAGACAAAGAAGCAGAGATGACCAAGCTATGGCATATGAGGCTTGGACATGCTGGAGAGAAATCCTTGCAAACTTTAGCAAAACAAGGATTATTAAAAGGTGCAAAGAATTGCAAGATGGATTTTTGCGAACAATGCGTATTGGGAAAACAAACAAGAGTGAAGTTTGCCAATGCAATCCATAACACTAAAGGCCATCTCATTAATCGTCTACCATCAGCCGCACTAAAAGGCAAGACACCTTTAGAGGTATGGTCTGGTAAACCTGCATATGATTATGATTCTTTACGTGTGTTTGGTTCCACTGCTTATTATCATGTAAAGGAATCTAAGTTGGATCCAAGAGCTAAAAAGGCATTGTTTATGGGTGTCACTTCGGGTGTAAAAGGATTCCGACTTTGGTGCCTatcttcaaagaaaattatttctagCAAAGATGTTACCTTTGATGAATCTGCCATGTTGAAAAAGGTAACTACAGATGGGATAAAATCAGACAACACTTCTCACCAGCCAAAGAGAAGTCAACAGCAAGTGGAGGGTACTCCACAACAGGTGGAGTTTCAAACAACTACAACTAAACTAGTAGATGACCAGCGGGTAGATCTTGATACTCCAGAAACAGAATTAGAGACTAGAGAAGAAGAGGTTTTAACGCAAGAATCTCTGCAGCAACAGGATTTACCAATTGCCATTAATGACATGTTGATAGCATCAAAGAATCGGGAGGAGATCAATAGACTGAAGGCTCAACTGAGCAAAGAATTCGAAATGAAAGATCTTGGTGAAGCTAAGAAGATCCTTGGTATGGAAATAACAAGAGATAGAAAGAGGggtattctttttttgactCAAAAGCAATATCTGAAGAAGTTACTACAACGTTTCAATATAACTGAAAAAACTAAACCTGTAAGTACCCCACTTGCTCTTCATTTTAAGCTTAGTGCTTCACAGTGTCCCAAAACTAAAGAGGAAGAGGAGTATATGTCGAAGGTTCCTTATTCAAATGCAGTGGGTAGCTTGATGTATGCTATGGTGTGTACGAGGCCTGACATTTCTCATGCAGTTGGAATTGTAAGCAGGTATATGCATAATCCTGGAAAGGAACATTGGCAAGCTGTGAAATGGATTCTAAGGTATATTCTGAAAACCTTAGACGTTGGTTTGATATTTGAGAAGAATGATGTTGGTCAGCATATAGTTGGATACTGTGATTCAGATTATGCTGGTGATTTGGATAAATGTAGATCAACTACTGGCTATGTGTTTACTCTTGCAAAAGCACCGATTAGCTGGAAGTCTACCTTACAGTCTACAGTTGCCTTGTCTACAACAGAGGCAGAGTATATGGCCATTACTGAAGCTGTTAAGGAAGCAATTTGGTTACAAGGGTTGCTTGAGGACTTAGGAGTTAGTCAGAAACACATTGTTGTGTATTGTGACAGTCAGAGTGCTATTCATTTAGCAAAGAACCAAGTTTATCATGATCGAACAAAGCATATTGATGTACGTGGGAAAACTAACCCGATTTTCCCAACAAAGACCATTGGATCATTGATAGATGTAGGAGGTGGGATCGGTGAGACAGTCTCTGAGATCGCGAAATCCTATCCGCATATCAAGTGCATAAACTTTGATCAGCCACATGTTGTCGCAACTGCATCTAAATACGAGGGAGTCACTCATGTTGGAGGCGATATGTTCCAAGCCATTCACAAGGCCGACGCCGTTTTCATGaagTGGGTAATGCATGATTGGAGCGATGAAAATTGTGTCAAGATTTTGAAGAAGTGCAAGGAAGCAATACCAGAAGAGAGAGGGAAAGTCATCATTGTGGACTTCGTTCTAAAGCCAGAGGGTGATGGCATTTTCGACGATACTGGTTTTGTCTTTGATTTGCTTATGATTGCACATGCCTCAGGCGGAAGGGAGAGGACTGAGTTAGAGTGGAAGAAAGTATTACAAGAGGCAGGTTTCCCTCGTTATAACATCATCACTATCAAAGCATTGCCATCAATCATTGAGGCCTACCCTATTTG	3281	0.391	MAKESSERSTTKPVTASLSKTMVTNAKFDVEKFDGTNNFGMWQCEVLDILYQQELDFALEEEKPDDIEEKDWTRINRLACGTIRLCLSKEQKYPFMRETSAHKLWKELNKLYMRTKLYRFQYLPGTTMNKHITRFDSLVTDLLNLDENINDTDKALILLASLPDEYEHLIVSMLAGKETITFKEVTTALYSNEIRKKDKLEHKSSAGEAHTVRGRSQSHKPSRRGRSRSKGKVAKDECAFCHEKGHWKKDCPKLQKKKGKAVAKACLAENDESDYSLSCVSTETCTDEWLLDSGCSFHMCSRKEWFFNFEEIDGGAVYLADNQSHKIAGFGSIYLKNHDGSTRALTDVRYIPKFAKNLISLGALESKGFTINMQNGILKVISRALVVMKGVRKNNLYHYQGSTAVGIAAAAVEADKEAEMTKLWHMRLGHAGEKSLQTLAKQGLLKGAKNCKMDFCEQCVLGKQTRVKFANAIHNTKGHLINRLPSAALKGKTPLEVWSGKPAYDYDSLRVFGSTAYYHVKESKLDPRAKKALFMGVTSGVKGFRLWCLSSKKIISSKDVTFDESAMLKKVTTDGIKSDNTSHQPKRSQQQVEGTPQQVEFQTTTTKLVDDQRVDLDTPETELETREEEVLTQESLQQQDLPIAINDMLIASKNREEINRLKAQLSKEFEMKDLGEAKKILGMEITRDRKRGILFLTQKQYLKKLLQRFNITEKTKPVSTPLALHFKLSASQCPKTKEEEEYMSKVPYSNAVGSLMYAMVCTRPDISHAVGIVSRYMHNPGKEHWQAVKWILRYILKTLDVGLIFEKNDVGQHIVGYCDSDYAGDLDKCRSTTGYVFTLAKAPISWKSTLQSTVALSTTEAEYMAITEAVKEAIWLQGLLEDLGVSQKHIVVYCDSQSAIHLAKNQVYHDRTKHIDVRGKTNPIFPTKTIGSLIDVGGGIGETVSEIAKSYPHIKCINFDQPHVVATASKYEGVTHVGGDMFQAIHKADAVFMKWVMHDWSDENCVKILKKCKEAIPEERGKVIIVDFVLKPEGDGIFDDTGFVFDLLMIAHASGGRERTELEWKKVLQEAGFPRYNIITIKALPSIIEAYPI	1093

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva07g00171	1093	Gene3D	-	210	263	-	-
	Bva07g00171	1093	CDD	RNase_HI_RT_Ty1	815	918	-	-
	Bva07g00171	1093	MobiDBLite	consensus disorder prediction	574	599	-	-
	Bva07g00171	1093	PANTHER	-	14	602	-	-
	Bva07g00171	1093	MobiDBLite	consensus disorder prediction	200	215	-	-
	Bva07g00171	1093	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	932	1092	IPR016461	GO:0008168
	Bva07g00171	1093	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	924	1091	IPR029063	-
	Bva07g00171	1093	ProSiteProfiles	Zinc finger CCHC-type profile.	238	253	IPR001878	GO:0003676\|GO:0008270
	Bva07g00171	1093	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	643	722	IPR013103	-
	Bva07g00171	1093	Pfam	GAG-pre-integrase domain	395	464	IPR025724	-
	Bva07g00171	1093	MobiDBLite	consensus disorder prediction	200	231	-	-
	Bva07g00171	1093	PANTHER	-	14	602	-	-
	Bva07g00171	1093	SUPERFAMILY	Retrovirus zinc finger-like domains	220	261	IPR036875	GO:0003676\|GO:0008270
	Bva07g00171	1093	Pfam	O-methyltransferase domain	928	1073	IPR001077	GO:0008171
	Bva07g00171	1093	Gene3D	Vaccinia Virus protein VP39	905	1079	IPR029063	-
	Bva07g00171	1093	SUPERFAMILY	DNA/RNA polymerases	645	916	IPR043502	-
	Bva07g00171	1093	Pfam	gag-polypeptide of LTR copia-type	72	198	-	-
	Bva07g00171	1093	CDD	AdoMet_MTases	933	1030	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva07g00171	Bva-Chr7	2880401	2886155	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva07g00171	930	1089	Monolignol Biosynthesis Gene Families	AT1G77520	46.296	1.56e-42	158

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva07g00171	-		-	ghi:121203494	375.941