Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03337 ATGAATCCGTTAACCCTAGTCAAACGCATTCAGAATATCAATTCGAAAGAAGCGGCACTTGGCATTGGTGAGGAAGCTTCCTGGCATGCCAAGTATAAGGATTCCGCTTATGTATTCGTCGGTGGCATTCCTTTTGATCTTACAGAGGGTGATCTCCTCGCCGTTTTCGCTCAATATGGGGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGTACTGGGAAGTCGAAAGGTTTTGCATTCCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCTGTAGATAATCTGAATGGGGCACAGATTTTAGGTAGAATCATCAGGGTTGATCatgtcaataaatataaaaagaaggaggaggaagatgaagaaacaGAGCGGCAAAAGAGGGAAGCTCGAGGTGTTTGTCGGGCCTTCCAAAGGGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCTAACACAGGATGGGGACATGAGGATGACAGTTCAAAATGGGGTCATGAAAAATTTGAGGGTCccgagaaagagaagagatctGGCAGTAACCTAGCAAATCTTATCGCAGGAACCAGAGACAGAGGTTCACGTTCCAGAGCTCATGGAGATGAAAAAGGATCAGAAAGCCAACCCAAACAAACTGACAGGAGAGAGGAAAAGGTAATTCGGAGGCATGATGATGGTAAATTCGagggaagagaaaattatgGCCGAAGAGAAGATGAGAGATCAAGGAGGCATGAAGATGATCAATTTGAACCTAGGTCAAGAGAAGATCGGGATagcaaggaagaaaaaagatcaaGGCATGATTATGATGATATGGAACGTGAGCCAAGAGATCAGCATCGGAGGGAAGACAAGAGGTCCAGAAGGCAAGATGATCTCAAATCTAGAGATTCTGATagaagggaagaaaagaaatcaaggaCACGGGATGATGATGATTATGGAAGTAGGTCAAAGCAGGATAGGGGTAACagggaagaaagaagatcaagGAGGGAGGGTGAAGATGAATTTGCACCAAGGTCAAGAGAACAATATAAGCATGATGATCTTGAcaggagagaagaaaagagatggAGAAGGTA 1115 0.3794 MNPLTLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVNKYKKKEEEDEETERQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGHEDDSSKWGHEKFEGPEKEKRSGSNLANLIAGTRDRGSRSRAHGDEKGSESQPKQTDRREEKVIRRHDDGKFEGRENYGRREDERSRRHEDDQFEPRSREDRDSKEEKRSRHDYDDMEREPRDQHRREDKRSRRQDDLKSRDSDRREEKKSRTRDDDDYGSRSKQDRGNREERRSRREGEDEFAPRSREQYKHDDLDRREEKRWRR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03337 371 Gene3D - 26 132 IPR012677 -
Bva06g03337 371 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Bva06g03337 371 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 306 - -
Bva06g03337 371 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Bva06g03337 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Bva06g03337 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bva06g03337 371 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bva06g03337 371 Coils Coil 115 135 - -
Bva06g03337 371 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Bva06g03337 371 MobiDBLite consensus disorder prediction 201 371 - -
Bva06g03337 371 MobiDBLite consensus disorder prediction 161 186 - -
Bva06g03337 371 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 306 - -
Bva06g03337 371 MobiDBLite consensus disorder prediction 161 371 - -
Bva06g03337 371 Gene3D - 133 230 - -
Bva06g03337 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Bva06g03337 371 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Bva06g03337 371 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03337 Bva-Chr6 23002013 23006859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03337 38 109 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 7.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03337 K13107 - gmx:100792988 470.7