Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03329 ATGGCATCAACATCTTGTGTTACCAAGAGTCCGTTCTCCAAGAAAGACGCAGTTTCTAATTATCATCAATATCCTCCCGCTACGGCAAGATACGAGGATGTTGTAGCTGATCCTAAGCTTTTTATGTCTACCTTGGAGAAGCTCCATGCCACAATGGGCACCAAGTTCATGATCCCTATTGTTGGAGGCCGAGAACTAGATTTGCACCGTCTCTTTGTGGAAGTAACTTCACGCGGAGGCATTGAAAAGATTATCAGAGAGAGAAGGTGGAAAGAAGTTACTGCTGTATTCAATTTTCCATCAACAGCTACAAATGCTTCCTTTGTCCTGCGGAAGTACTACTTTTCATTACTCTATCACTACGaacaaatttactattttaaagCTCATGGATGGACTCCTAGCGCTACTGATGCTTTACAGAGTCTATCACCTGTGCCAATTCCTACTCAAAGAACACAACCTTTGCAGACCTCGCTGGGATTTCAATCAGCTGTGCTTCAGCAGTCTAGGGTTAATGCTGCTGAATTTCTTGAAGCAACATCAGCATCTTCAGCAGGATCTCCAGTCCTTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTTGTTACCGTCACCATTGGTTCCGAGAAACTTAAAGGTGTACTTTATCAGTCTCCAGAGATGCCTGTACTGCCTACATCACGGCAGTATAATGTTTTGGCCAACAACAATAATCCTTCTGCCTCATCTGGTGTTCAACGTCGCCGGCGCCGGAAGAAATCGGAGATAAAAAGGAGAGATCCAGCTCATCCCAAACCCAACAGAAGTGGAtacaatttcttctttgcagAGCAGCATGCAAGACTGAAGCCTCTTCACCAAGGGAAAGACAGAGAGATCAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAAGATTCAGAGAAAGCAATTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACAGAGCAGAGATGGAGGATTATCGAGAAAAGCTGAAGGCAGGTCAAGTTATCAGCGATGCAGTGCCACTGCAACAACGGCTTCCTGAAACAGATATGATGGATGTAGATGCAGATGTAAAATTGGATGAAACCGAAGCCGGGGACTTGCTGCAAACACCTGAGAATGAGAGTAGTTCTGGTGCAAGCGACTACGAAGACGTTCAAGCTGCAGAGAAGGATCTGGTTTTGGATGCATCTGATGGAATTGCAGTGGGAGCTGAATCAAGCTATTTGGGTGCAGAGAAGTCATCAAAGGAAGTTGATTTTGAGGTTCCCAAGAGAGACGGCAATGGAGGAGATGAACCAATTAAAAAGATGGACGAGGGCAAAAGCTTACTTGCAATACTGTA 1364 0.4355 MASTSCVTKSPFSKKDAVSNYHQYPPATARYEDVVADPKLFMSTLEKLHATMGTKFMIPIVGGRELDLHRLFVEVTSRGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYFSLLYHYEQIYYFKAHGWTPSATDALQSLSPVPIPTQRTQPLQTSLGFQSAVLQQSRVNAAEFLEATSASSAGSPVLGVIDGKFESGYLVTVTIGSEKLKGVLYQSPEMPVLPTSRQYNVLANNNNPSASSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRMIGELWNKLKDSEKAIYQEKALKDKERYRAEMEDYREKLKAGQVISDAVPLQQRLPETDMMDVDADVKLDETEAGDLLQTPENESSSGASDYEDVQAAEKDLVLDASDGIAVGAESSYLGAEKSSKEVDFEVPKRDGNGGDEPIKKMDEGKSLLAIL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03329 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 405 - -
Bva06g03329 454 CDD HMGB-UBF_HMG-box 266 330 - -
Bva06g03329 454 MobiDBLite consensus disorder prediction 234 273 - -
Bva06g03329 454 MobiDBLite consensus disorder prediction 412 454 - -
Bva06g03329 454 SUPERFAMILY HMG-box 254 338 IPR036910 -
Bva06g03329 454 MobiDBLite consensus disorder prediction 375 389 - -
Bva06g03329 454 SMART ARID_2 32 122 - -
Bva06g03329 454 SMART bright_3 36 127 IPR001606 GO:0003677
Bva06g03329 454 Gene3D - 27 133 IPR036431 GO:0003677
Bva06g03329 454 MobiDBLite consensus disorder prediction 419 446 - -
Bva06g03329 454 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Bva06g03329 454 SUPERFAMILY ARID-like 32 133 IPR036431 GO:0003677
Bva06g03329 454 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Bva06g03329 454 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Bva06g03329 454 SMART hmgende2 265 334 IPR009071 -
Bva06g03329 454 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Bva06g03329 454 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Bva06g03329 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 405 - -
Bva06g03329 454 Coils Coil 315 342 - -
Bva06g03329 454 Gene3D High mobility group box domain 250 345 IPR036910 -
Bva06g03329 454 MobiDBLite consensus disorder prediction 370 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03329 Bva-Chr6 22841131 22847046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03329 1 366 ARID Transcription Factor Family AT1G04880 60.982 1.96e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva06g03329 ARID 5.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03329 - - gmx:100783284 572.778