Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03309 ATGTCAAGTTTTCACGTGGGTGGCAAGGTGGTGGAGAGGGTTGATTTGTTGAGGAAGAAGGAATGGCAATGGCGTTTTGATGTTTGGCCTTTTGTTATTTCATATCTTACCTGGATAACTACGATTCTTCCTAGCTTAGATTTTGTGGATGCAGCCGTAGTTTTGGGTGGGCTTGTAGCTCTTCACATTCTGGTTTGGCTGTTCACCAGTTGGTCAGTCGATTTTAGATGTTTTGCCCATTATAGTAAGGTTAAAAGCATTCACAATGCAGATGCATGCAAGGTAACTCCAGCAAAGTTTTCAGGCTCCAAAGAGGTGGTCCCACTTAATTTCCGTAAAACACCTGTAGGTTCTTCATCTCCTTTGGATTTGGAGGAAATTTACTTTGATTTCAGAAAACAACGATTCGTCTATTCAAAGGAGAACGGGACGTTTTGCAAGCTTCCTTACCCTACCAAGGAAACATTTGGATATTATCTCAAATCCACTGGCCATGGCACTGAAGCTAAAGTTTATGCTGCCACTGAGAAATGGGGACGGAATGTATTTGATTATCCACAACCTACATTTCAGAAATTGATGAAGGAGCACTGTATAGAGCCCTTTTTTGTATTTCAGGTTTTCTGTGTGGGCCTTTGGTGCTTGGATGAATATTGGTATTACAGTTTGTTTACTCTATTTATGCTGTTTATGTTTGAGTCCACAATGGCAAAAAGTCAGTTGAAGACTCTAACTGAGTTAAGACGTGTTAGAGTGGATAGCCAGATCCTAATGGTGCATCGCTGCGGCAAGTGGGTAAAACTCTCTGGTACGGATCTTCTGCCTGGGGATGTTGTGTCTATAGGTCGCTCTTCAGGCCAGAGTGGAGAGGAAGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCTATAGTAAATGAAGCCATTCTCACAGGCGAGTCTACTCCTCAATGGAAGGTTTCAATCATGGGAAGGGGGATTGAGGAGAAGCTGTCTGCCAGGCGAGATAAAACCCATGTCTTGTTTGGTGGCACTAAAATATTGCAGCACACTCCTGATAAGTCCTTTCCACTCAAAACTCCGGATGGTGGTTGCCTAGCTGTTGTCCTAAGAACAGGGTTTGAAACCAGTCAAGGGAAGTTGATGCGAACAATATTATTCTCTACCGAGAGGGTGACTGCTAATAGCTGGGAAAGTGGGCTATTCATATTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTACGTACTTATAAAGGGGCTAGAAGATCCTACAAGAAGCAAGTATAAGCTTCTACTAAGTTGTTCGCTTATTATTACATCTGTGATCCCTCCTGAGTTACCAATGGAATTATCGATAGCTGTAAATACTTCCTTGATTGCATTGGCACGCCGGGGAATTTTTTGCACAGAGCCTTTCCGAATTCCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGTACACTTACATCCGATGACATGGAGTTCTCTGGAGTTGTTGGGTTAGCGGGGACTACTGATTTAGAAACTGATATCAGCAGAGTGCCTGCACGTACAGTTGAAATTCTTGCTTCTTGCCATGCCTTGGTGTTTGTTGACAATAAGCTGGTTGGTGATCCTCTTGAAAAGGCTGCTCTTAAGGGAATTGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGAAATGGCCGTCTCGTCCAAATTGTTCAGCGCCACCATTTTGCATCTCACTTAAAACGAATGGCTGTTGTTGTTCGCATTGAGGAGGAGTTTTTTGCCTTTGTGAAGggTGCCCCGGAAATTATTCAAGATAGACTAGCTGACTTACCACCATCTTATGTTGAGACCTACAAGAAATATACACGTCAGGGCTCTCGTGTTCTTGCCCTTGCTTACAAGTCTCTTCCAGATATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATTGTGGAGAGTGGACTTACTTTTGCTGGTTTTGTGgTATTTAATTGCCCTATTAGATCAGATTCGGCCACAGTTTTATCTGAGTTGAAAGGATCATCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGttcatataatatcaaaacctACATTAATCCTTGGTCCTGCAAGTAATGGTGAAGGATATAATTGGATGTCCCCAGATGAGACTGAGATAATTCGGTACagTGAGAAAGACGTTGAAAATTTATCAGACACGCATGATCTTTGTATTGGAGGTGATTGCATTGAGATGCTGCAACAGACATTTGCTACTCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAGGAACTCATCATGACCACTTTCAAAACAGTTGGTAGGGTAACTTTGATGTGTGGGGATGGAACCAACGATGTTGGAGCTTTGAAGCAGGCTCATGTAGGAGTTGCTCTTCTCAATGCATTACCCCCAGCTCAGAGTGGAAACCCCTCTTCAGACACTTCTAAGGAGGGTGCAAAGTCTGCCAAGCCAAAGAAGCCTAAGACTGCACCTGAAGCATCTGGAAAATCTAACAGCCCACTTGGAGAAGGCACTTCAAAAGGCAAGGTTGCTTCAAGATCAGATTCCACCAGCAACTCATCCAGTAATCGTCATATGACAGCTGCAGAATTGCAGCGCCAAAAGCTTAAGAAGTTGATGGATGAGCTTAACGAGGAAGGAGATGGTCGCTCAGCTCCTACTGTCAAGCTCGGTGATGCCTCAATGGCATCCCCATTCACCGCGAAACATGCATCTGTTGCTCCCACCACTGACATAATTCGTCAAGGTCGCAGTACTCTTGTGACAACCCTGCAGATGTTTAAAATTCTGGGTCTCAACTGCCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTCGGCGATATACAGGCTACTATAAGCGGTGTCTTTACTGCGGCCTTTTTCCTCTTCATCTCACATGCACGCCCTCTTCCCACCTTGTCAGCTGAGCGTCCTCACCCCAATGTCTTCTCCTTttatctcttcttctctctcatgGGACAATTTGCAGTGCACCttctttttctgatttcttCTGTGAATGAGGCCGAGAAATACATGCCTGATGAATGCATTGAACCAGATTCTAACTTTCATCCCAACCTGGTGAATACTGTTTCTTACATGGTGAGCATGATGCTTCAGGTGGCTACTTTTGCTGTGAACTATATGGGTCATCCTTTTAACCAGAGCATATCTGAAAACAAACCATTCTTGATTGCTCTTACTGGTGCTGTTGGATTCTTCACAGTGATTACATCTGATCTGTTTAGGGATTTAAATGACTGGCTGAAACTAGTCCCATTGCCTCCGGGATTAAGGGATAAACTACTGATTTGGGCATTGCTCATGTATTTGGGGTGCTATTCATGGGAAAGACTGTTAAGGTGGGCTTTCCCTGGTAAGATGCCTGCATGGAAGAAGCGACAACGGGTGGTTGCAGctaatttagaaaagaaaaatatcta 3578 0.4285 MSSFHVGGKVVERVDLLRKKEWQWRFDVWPFVISYLTWITTILPSLDFVDAAVVLGGLVALHILVWLFTSWSVDFRCFAHYSKVKSIHNADACKVTPAKFSGSKEVVPLNFRKTPVGSSSPLDLEEIYFDFRKQRFVYSKENGTFCKLPYPTKETFGYYLKSTGHGTEAKVYAATEKWGRNVFDYPQPTFQKLMKEHCIEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSQLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQSGEEEKSVPADMLILAGSAIVNEAILTGESTPQWKVSIMGRGIEEKLSARRDKTHVLFGGTKILQHTPDKSFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPTRSKYKLLLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLAGTTDLETDISRVPARTVEILASCHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAVPKKGNGRLVQIVQRHHFASHLKRMAVVVRIEEEFFAFVKGAPEIIQDRLADLPPSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARSLDRDIVESGLTFAGFVVFNCPIRSDSATVLSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGEGYNWMSPDETEIIRYSEKDVENLSDTHDLCIGGDCIEMLQQTFATLLVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQAHVGVALLNALPPAQSGNPSSDTSKEGAKSAKPKKPKTAPEASGKSNSPLGEGTSKGKVASRSDSTSNSSSNRHMTAAELQRQKLKKLMDELNEEGDGRSAPTVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNVFSFYLFFSLMGQFAVHLLFLISSVNEAEKYMPDECIEPDSNFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFLIALTGAVGFFTVITSDLFRDLNDWLKLVPLPPGLRDKLLIWALLMYLGCYSWERLLRWAFPGKMPAWKKRQRVVAANLEKKNI 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03309 1192 Pfam E1-E2 ATPase 258 469 - -
Bva06g03309 1192 Pfam haloacid dehalogenase-like hydrolase 486 714 - -
Bva06g03309 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 508 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva06g03309 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 781 829 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva06g03309 1192 CDD P-type_ATPase_cation 170 1108 - -
Bva06g03309 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 495 679 IPR023299 GO:0000166
Bva06g03309 1192 ProSitePatterns Hypothetical cof family signature 2. 810 832 - -
Bva06g03309 1192 SUPERFAMILY Calcium ATPase, transduction domain A 255 388 IPR008250 -
Bva06g03309 1192 Gene3D - 670 839 IPR023214 -
Bva06g03309 1192 SUPERFAMILY HAD-like 484 837 IPR036412 -
Bva06g03309 1192 MobiDBLite consensus disorder prediction 834 899 - -
Bva06g03309 1192 MobiDBLite consensus disorder prediction 863 899 - -
Bva06g03309 1192 SFLD p-type atpase 470 956 IPR044492 -
Bva06g03309 1192 Gene3D - 485 669 IPR023299 GO:0000166
Bva06g03309 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1186 - -
Bva06g03309 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 491 497 IPR018303 -
Bva06g03309 1192 Gene3D - 226 389 - -
Bva06g03309 1192 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Bva06g03309 1192 PRINTS P-type cation-transporting ATPase superfamily signature 691 701 - -
Bva06g03309 1192 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Bva06g03309 1192 PRINTS P-type cation-transporting ATPase superfamily signature 810 829 - -
Bva06g03309 1192 Coils Coil 897 917 - -
Bva06g03309 1192 SFLD C1.7: P-type atpase like 470 956 - -
Bva06g03309 1192 PANTHER CATION-TRANSPORTING ATPASE 1 1186 - -
Bva06g03309 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 1170 IPR023298 -
Bva06g03309 1192 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 38 1150 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03309 Bva-Chr6 22181458 22199681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03309 1 1191 Primary Pumps ATPases AT5G23630 78.859 0.0 1939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03309 K14950 - gmx:100789385 2061.19