Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03293 ATGGCATGCCCTCAAGAGTTCTTGTGCCCTATATCGTTTGAGATCATGGAGGATCCTGTGGTCATCGCCACCGGCATTACCTATGAAcgaaaaaatattgaaaaatggtTGTttgttaagaagaaaaagacttGCCCTGCAACTGGACAAGAACTGAAGAATTTTGATCTTACTCCAAATGACCTTTTGAAGAGAATTATCTCATCATGGAGAAACAAAAGGAGCTCAGAACAAGGTGAAGGAAGTGGGACGTCTAAGCAGAACAAGAAGAATGACAGTTA 281 0.3701 MACPQEFLCPISFEIMEDPVVIATGITYERKNIEKWLFVKKKKTCPATGQELKNFDLTPNDLLKRIISSWRNKRSSEQGEGSGTSKQNKKNDS 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03293 93 ProSiteProfiles U-box domain profile. 2 77 IPR003613 GO:0004842|GO:0016567
Bva06g03293 93 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 82 - -
Bva06g03293 93 SUPERFAMILY RING/U-box 3 75 - -
Bva06g03293 93 CDD RING-Ubox_PUB 7 50 IPR045210 -
Bva06g03293 93 PANTHER WDSAM1 PROTEIN 3 82 IPR045185 GO:0061630
Bva06g03293 93 MobiDBLite consensus disorder prediction 70 93 - -
Bva06g03293 93 Pfam U-box domain 4 75 IPR003613 GO:0004842|GO:0016567
Bva06g03293 93 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Bva06g03293 93 MobiDBLite consensus disorder prediction 72 86 - -
Bva06g03293 93 SMART Ubox_2 6 70 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03293 Bva-Chr6 21953232 21953513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03293 4 70 U-box Gene Family AT2G35930 61.194 1.71e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03293 - - qsu:111983273 117.087