Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03287 ATGTGTGGAGGTGCTATCATTTCTGGCTACGACGATGAGAAGCCTCGCCGGAGACTGGATACCAAGGAACTCTTTTCCCAGATTGATTCCTTCTCCAACCTCTTTGGCTTGGACACCGCTATCCCTGTTGCCAAACACCACCAGCACGATCCTCAAAATCCACCCAGCAAAGTGGCTTGTGATAACAccgaagagaagaaaagtgtGAATGCCGAAAAGGCAGTGAAGGGAACTCAGAGAGTTCGTAAGAACATTTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCAGCTGAGATAAGGGACCCACACAAGGGTACCCGAGTCTGGCTCGGCACCTTCAACACTGATATCGAAGCCGCCAGAGCCTACGACGAAGCCGCCAAGCGCATACGCGGCGACAAGGCTAAGCTCAACTTTCCCGACCAGCTGGCCGTGCAATCAGCCCCAGCCCCAGCCCCAGCCACAGCTCCTGAGCCACCCACCAAGAAGCAGTGCCTGAGCCACGAGCTCACTGAGCCGCCGCCATTCACTGGAGCACCAGCCCAACCCGAGCTGAAGCAAACCATCTCAAGATTGGAAACTCTCTTGGGTCTGGAGCATGAGGAGCCGAGCCAGCTGCTTTCTGGATGCATCGGCTGGAACGAGCCGTGGAACCTGGACGACGTCGTTAAGTATCACATGTATTA 692 0.5405 MCGGAIISGYDDEKPRRRLDTKELFSQIDSFSNLFGLDTAIPVAKHHQHDPQNPPSKVACDNTEEKKSVNAEKAVKGTQRVRKNIYRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTDIEAARAYDEAAKRIRGDKAKLNFPDQLAVQSAPAPAPATAPEPPTKKQCLSHELTEPPPFTGAPAQPELKQTISRLETLLGLEHEEPSQLLSGCIGWNEPWNLDDVVKYHMY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03287 230 MobiDBLite consensus disorder prediction 45 69 - -
Bva06g03287 230 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Bva06g03287 230 Pfam AP2 domain 86 134 IPR001471 GO:0003700|GO:0006355
Bva06g03287 230 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Bva06g03287 230 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Bva06g03287 230 PANTHER EREBP TRANSCRIPTION FACTOR 1 158 - -
Bva06g03287 230 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Bva06g03287 230 PANTHER DNA-BINDING DOMAIN 1 158 IPR044808 GO:0003700|GO:0009873
Bva06g03287 230 MobiDBLite consensus disorder prediction 148 184 - -
Bva06g03287 230 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Bva06g03287 230 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Bva06g03287 230 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03287 Bva-Chr6 21841540 21843294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03287 1 225 AP2-EREBP Transcription Factor Family AT3G16770 43.023 4.07e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g03287 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03287 K09286 - mnt:21388719 198.364