Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03183 ATGGCGGTTGAATCTCGGAAATTATGGGTCTGTTTCTGCTCTCTGGTACTTGCAATGTTCTTCGTTGACGCCATGGCCGGAGCTCAGATCTATGAATCCAGgaaTGTGAAGACGCAGCTATTGCAGAGGTTGAGCAACTCATCAATGGAAGCCAGggCAAAAGAAGCTGAAAAATTGAATGAGCAGGCGGCAGCGGCAGATCCTGAGGAAGTTGCGTCCTTGGTTGAAATGAGAATCAGGAACAGCACAGAAAGGAGGAAGTTGGGATTTTTCTCCTGTGGAACAGGTAACCCAATTGATGATTGCTGGCGTTGTGACCCCAACTGGCACAAGAACCGGAAGCGTCTTGCAGATTGCGGCATTGGATTTGGCAGAAACGCCATTGGTGGCCGTGATGGCAGATTCTATGTTGTCACTGATCCCAGAGATGATGACCCTGTTAACCCCAAGCCAGGCACTCTTCGCCATGCTGTGATCCAAGACAGGCCTCTCTGGATTGTGTTCAAGCGTGACATGGTTATCCAATTGAAGCAAGAGCTCATTGTGAACAGCTTCAAGACAATTGATGGCCGAGGAGCTAATGTCCACATTGCCAATGGAGGGTGTATCACTATCCAATATGTCACCAATGTTATCATTCATGGTCTCCACATCCATGACTGCAAACCCACTGGCAATGCCATGGTGAGGAGCTCACCCACACACTATGGATGGAGGACAATGGCTGACGGAGACGCCGTCTCCATTTTCGGCTCAAGTCACATCTGGGTCGACCATAATTCTTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGTTCAACTGCAATTACAATTTCCAACAACCACTTAACCCACCACAACGAGGTGATTTTGCTGGGCCACAGTGATTCTTACACAAGAGACAAGCAAATGCAAGTGACCATTGCATACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCCAGGTGTAGGCATGGATATTTCCATGTTGTAAACAATGACTACACTCACTGGGAGATGTACGCAATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGCAATAGATACAATGCTCCAGCTAACCCATTTGCCAAAGAGGTGACTAAGAGAGTAGAAACAGCTGAAAGCCAATGGAAGGGTTGGAATTGGAGATCCGAAGGAGATCTGTTGGTGAATGGTGCCTATTTCACCCCATCTGGTGCTGGAGCTTCTGCTAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAGTCTTCTTCCATGGTTGGCAGCATGACTTCCAACGCCGGTGCCCTCGGTTGCCGCCGAGGCCGTCAGTGTTA 1337 0.4899 MAVESRKLWVCFCSLVLAMFFVDAMAGAQIYESRNVKTQLLQRLSNSSMEARAKEAEKLNEQAAAADPEEVASLVEMRIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANPFAKEVTKRVETAESQWKGWNWRSEGDLLVNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCRRGRQC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03183 445 PANTHER PECTATE LYASE 18-RELATED 24 442 IPR045032 GO:0030570
Bva06g03183 445 Pfam Pectate lyase 177 360 IPR002022 -
Bva06g03183 445 SUPERFAMILY Pectin lyase-like 74 439 IPR011050 -
Bva06g03183 445 PANTHER PECTATE LYASE 24 442 - -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Bva06g03183 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Bva06g03183 445 SMART amb_all 171 368 IPR002022 -
Bva06g03183 445 Coils Coil 46 66 - -
Bva06g03183 445 Gene3D - 96 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03183 Bva-Chr6 20141088 20145860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03183 28 445 Polysaccharide Lyase AT4G13710 80.378 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03183 K01728 - gmx:100808253 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03183 06 20141088 20145860 Bva06g03183 06 20141088 20145860 ECH