Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03147 ATGGATGAGGTTCAAAGAGCTACAGCTGGAGTCTCTTTGATAAGCACTGCAAGTGGGAGCACAGATTACAGAATCAGAATCACAGGCGCAGTTTTGTCAAACCTTCGGGTGGTGAGATCTCAGGCTGAACGAATTAGGGGTCCAATTGAAAGAGTTAGAATCATAAGGAGACTGGATTGGGCTATCACTCAGGTTGAACATGTTAGGGCTCTCCAAAGGAATGCAGGTCCAGATGGCGAATCCGTGGAGAGAGTAGATTTGGGACACATACGCCGACTCCTGCAATTGGCTAACACAATCATCCGATCTGAGAGGATTCAAACTCGAAGAGAGACCGAAGGAGTGCTCCAAACTGTTATTGCAGAATCAATTGAAACCCATGAAAATAGACCTAGGCCGGCTTGCCCTACAGCTGTTGAGAAGATGCTTCAAAAGATTGAAATAGGTAATGTTCCTGAAGAACAATGCAGCATCTGCTTGGATGATTATGAGGTTGAGATGGGAATATGTGTTAGCATCCCTTGTTCACATCATTTTCACAAAGATTGTATCATGAAGTGGCTGGAAGAGAGTAACACATGTCCTATGTGCCGATTCATGTTTCCTGCTGCAAAAAGGAATTA 623 0.443 MDEVQRATAGVSLISTASGSTDYRIRITGAVLSNLRVVRSQAERIRGPIERVRIIRRLDWAITQVEHVRALQRNAGPDGESVERVDLGHIRRLLQLANTIIRSERIQTRRETEGVLQTVIAESIETHENRPRPACPTAVEKMLQKIEIGNVPEEQCSICLDDYEVEMGICVSIPCSHHFHKDCIMKWLEESNTCPMCRFMFPAAKRN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03147 207 PANTHER F6A14.12 PROTEIN-RELATED 75 202 - -
Bva06g03147 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 202 - -
Bva06g03147 207 SUPERFAMILY RING/U-box 150 203 - -
Bva06g03147 207 SMART ringv_2 155 198 IPR011016 GO:0008270
Bva06g03147 207 CDD RING-H2_PA-TM-RING 155 198 - -
Bva06g03147 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 198 IPR013083 -
Bva06g03147 207 Pfam Ring finger domain 155 198 IPR001841 -
Bva06g03147 207 SMART ring_2 156 197 IPR001841 -
Bva06g03147 207 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03147 Bva-Chr6 19764651 19765274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03147 151 199 C3H Transcription Factor Family AT1G68070 52.000 4.00e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03147 K22378 - qsu:111998698 82.0333