Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03140 ATGAATGGAGAATCTGAGGGGCTCATAGACAGCATGAGATCCATAAGTAGAAGCCTGGACGGCATCATAGCTACCCTGAACCACATGGAGAGTTCTGTCAGCCTTGTCTTGAAACACATCAAGGACCGCTTGGAACAGGTTATCCCTGCAGTATCTGAGCTTGAACGTACTATGGTTCCAATTCAAGGAGAAACCAAAAGAGCACTTGTTATGAGGGATCCAgatcaaagagaagaaaatattagaatgCTCGAAAGAATTATTACTGAATCAATTGAAAGCCACAGAAAAAGGCCTAGATTTATTGTGGAGCAGATTCGAAAGGTTGCAATCAACAATATTCCTGAAGGGCAATGCAGCATCTGCTTAGATGACTTTCAAGCTGAGATGGAAGTGATGGCAAAACTGTGTGTCATCATGCCTTGTTCgcatatttttcataaagacTGTATCATGAAATGGTTGGAAGAACGTAACGTCTGTCCAATATGCCGATTCgctttttctataaaaagagTTAGGGTTGAATA 530 0.3774 MNGESEGLIDSMRSISRSLDGIIATLNHMESSVSLVLKHIKDRLEQVIPAVSELERTMVPIQGETKRALVMRDPDQREENIRMLERIITESIESHRKRPRFIVEQIRKVAINNIPEGQCSICLDDFQAEMEVMAKLCVIMPCSHIFHKDCIMKWLEERNVCPICRFAFSIKRVRVE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03140 176 Pfam Ring finger domain 118 165 IPR001841 -
Bva06g03140 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 170 IPR013083 -
Bva06g03140 176 SMART ringv_2 118 165 IPR011016 GO:0008270
Bva06g03140 176 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 64 166 - -
Bva06g03140 176 ProSiteProfiles Zinc finger RING-type profile. 119 165 IPR001841 -
Bva06g03140 176 SMART ring_2 119 164 IPR001841 -
Bva06g03140 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 166 - -
Bva06g03140 176 SUPERFAMILY RING/U-box 118 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03140 Bva-Chr6 19710456 19710986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03140 116 166 C3H Transcription Factor Family AT3G58720 43.137 2.10e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03140 - K11982 pper:18766796 80.1073