Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03139 ATGGATGCGCCTCAAAGAGCCATGGAGTTCTTAGAGCTGGGTCAGTACAGATGGGTCCCCGTGCAGAGAACAGGATCCATGGAGGACACTGATTTGAGTCAGTACACAAGGGTCCGCATGCGGAGAGTAAGTAATTGGATGCTTCCAATTCAAAGAGAAACTGATGAAGTGCGGGTTATCACAGAATCAATTGAAACCTACGAAAACAGACCTACGCCGGCTTGCCCTTGCTGTGTTCAGAAGCTGCTTCAGAAGGCTGAAATTGGCAACATTGAAGGACAGTGCTGTATTTGTTTGGATGACTTTCAGACTGATATGGACGAGAGTGTCACCACCCCATGTTCACATACTTTCCACAAAGTTTGTATTTTGAAGTGGTTGAAAGAGAATAATGCTTGCCCTTTGTGTCGATACACTTTTCCCGCATA 428 0.4579 MDAPQRAMEFLELGQYRWVPVQRTGSMEDTDLSQYTRVRMRRVSNWMLPIQRETDEVRVITESIETYENRPTPACPCCVQKLLQKAEIGNIEGQCCICLDDFQTDMDESVTTPCSHTFHKVCILKWLKENNACPLCRYTFPA 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03139 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 40 141 - -
Bva06g03139 142 SUPERFAMILY RING/U-box 94 140 - -
Bva06g03139 142 Pfam Ring finger domain 94 137 IPR001841 -
Bva06g03139 142 PANTHER F6A14.12 PROTEIN-RELATED 40 141 - -
Bva06g03139 142 SMART ring_2 95 136 IPR001841 -
Bva06g03139 142 Coils Coil 50 70 - -
Bva06g03139 142 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Bva06g03139 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 138 IPR013083 -
Bva06g03139 142 SMART ringv_2 94 137 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03139 Bva-Chr6 19705435 19705863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03139 57 141 C3H Transcription Factor Family AT1G26800 40.698 1.83e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03139 - K22378 qsu:111998698 78.1814