Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03075 ATGGCAGGCCACATGGGCTGGGGTATATTAGAGGAAGAGGGTTGGAGGAAAGGTCCCTGGACTACTGAAGAAGACAGATTGCTCATTGAATATGTTAGAGTCCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTAGCAGGCTTGAAAAGGAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCCCAAGAAGAGAGAATAATTCTTGAGCTTCATGCCAGATGGGGAAATAGATGGTCAACAATTGCTAGAAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAAGCCCAAGAATCCCCCTGATGCTGCAGAAAAGGCGAAAAATCGCCTTTTGAGGCGGCAGCAATTCCATCAGCTACAACAGCAGCAGTTGCAGaagcagcagcaacaacaacagctTCAATTCAGCTTGGACATGAAGAGTATCATCGCCTTGCTTGAAGACAATGAGCACAAAACTCCTTTCTCTCAAGCAATTCAAGTTAACAATTTTTACCCAAACACCGCCACAGAGGAGCAAAGTTGCTTCTACTCTATGCTCAATGGCAATGCCTCTATGCCTTATGAGGCctcaaatgaagaaattttctgGGATGGATTGTGGAACTTAGATGATTTTCATGGAAGTTTCAGTGCAGCTGGTGCTACAAAGCAAGCCAATCTGCACAATTTAGTTGCTCCCTTCTGTTA 758 0.4261 MAGHMGWGILEEEGWRKGPWTTEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEERIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKPKNPPDAAEKAKNRLLRRQQFHQLQQQQLQKQQQQQQLQFSLDMKSIIALLEDNEHKTPFSQAIQVNNFYPNTATEEQSCFYSMLNGNASMPYEASNEEIFWDGLWNLDDFHGSFSAAGATKQANLHNLVAPFC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03075 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 244 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva06g03075 252 PANTHER MYB TRANSCRIPTION FACTOR 1 244 - -
Bva06g03075 252 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Bva06g03075 252 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Bva06g03075 252 CDD SANT 19 64 IPR001005 -
Bva06g03075 252 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Bva06g03075 252 SMART sant 16 66 IPR001005 -
Bva06g03075 252 SMART sant 69 117 IPR001005 -
Bva06g03075 252 Gene3D - 17 69 - -
Bva06g03075 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Bva06g03075 252 Gene3D - 74 118 - -
Bva06g03075 252 CDD SANT 74 115 IPR001005 -
Bva06g03075 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Bva06g03075 252 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Bva06g03075 252 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03075 Bva-Chr6 19055585 19056818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03075 12 252 MYB Transcription Factor Family AT3G24310 59.766 2.91e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g03075 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03075 K09422 - gmx:100818237 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03075 06 19055585 19056818 Bva06g03075 06 19055585 19056818 ECH