Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03072 ATGGATTCTCTCTCCTCTGTTCAAGACCTTAATCTCCTTCCAGTCACTCGTGGGAATATGCCCAGTAACAGCTCCGGCGCCACCGCCAACCCCAACGCCGTCGCCGTACCCACCACCAAGGCAGCCGGGAAGGAGACATTAACCCCAATGTTGGTACCGAAAGCTGAGCCGTCGGACGAACCGCTTGCCACACTGTCCCAAGAAGCATTCTTTTCAACCCCTTCGGCAAATGGGTTCTCTTACTCTCCGAGTTCTGCTTTCTCTTCCGGCGACTTCACATTTTCTGACACCACAGGGGCATCCCCAGATGAAGGGAATTTGTACTCTGAGTTTTGCCGGATTTCTGAGCTTTTCAGGGCCGCGTTTGCTAAAGGGAAGGAGCAATTGGGAGGAGAAGGCACTGGTTTGGATTCAAAAACGGGGGCAATTGTTCCGGTGCCGGAGCAGAGCCAGAATGCCCCGGTGGTGGTTTCCCCGAAGCCGAAGCCGCGGCAGAAGGAGCTGGTGAGGGTCACAGATCTTAGAATTGCGGACCAGAGGCATTTCCGCGACGTTATGAGACGGACAAGGTTGATCTATGATTCGTTGCGTGTTTTGGCAACGGTGGAGGAGGAGAGAAGAAGCGAATTCGCGTGCCAGAAGCGCCTGCGAGGTGATTTGAGGGCTGCTTCGTTGATGAGGAATCGTGGGATGTGGCTGAATCGCGATAAAAGAATAGTGGGTTCGATACCAGGGATTGACATTGGCGATTTGTTCTTCTTCAGAATGGAATTGGTGGTGGTTGGGTTGCATGGTCAGGCACAAGCTGGAATTGACTATCTCCCTGGGAGCATGAGCTCAAATGGACAGCCAATAGCTACCAGTGTTATAGTTTCTGGTGGGTATGAGGATGATGAAGATGGCGGCGAAGAGATAGTCTATACAGGTCATGGAGGGCAAGACAAGTATTCGAGGCAATGTGAACATCAGAAGCTAGAAGGGGGAAATCTTGCATTGGAGAGAAGCATGACTTATGGGATTGAAGTGAGGGTTATTCGAGGGATCAAATACGAGGGAAGTGTTGCtagtaaaatttatgtttatgatggcttgtataaaattattgattgcTGGTTTGATGTGGGCAAGTCTGGTTTTGGAGTTTACAAGTATAAGCTAATGAGAATTGAAGGGCAACCTGAAATGGGTAGTATGATTCTCAGGCGTGCTGCTGCTCTTAGGATGAATCCATATGCGGACAAGTTGCCTTATGTTAGCCTTGATCTTTCAAACAAGAGGGAGAGTGTTCCTGTTCGTCTATTTAATAACATAGATTCTGCTTATGATcctcttcgttttgagtatcttCTAAGGACTACTTTCCCTCCATTTGTGATTAGTAAGAATGGTACTGGTTGTGAGTGTGTCTCAGGCTGTACTGAAGGCTGCCTTTGTGCTATGAAAAATGGGGGTGAGTTTGCTTATAACATGAGCGGGTTTCTTGTGAGAGGGAAACCTGTAATTTTCGAATGTGGCCCTTTCTGCAGTTGTCCTCCAGAATGTCGGAACCGTGTCACACAAAAGGGGTTTAAACATCAGTTGGAAGTGTTCAGATCTAGGTTAACAGGTTGGGGAGTTAGGAGCTTGAACCTTATACATGCTGGTTCCTTTATCTGTGAATATACAGGGGTTGTTCTGACTAGCGAGcaagcaaaaattttaacaatgaATGGTGATAAACTGATATATCCAAATCGATTTCCTGATAGGTGGGCAGACTGGGGTGACGTATCCCAGGTATTCTCTGATTATGTGCGTCCATCTTTTCCAACAATTCCTCCATTAGATTTTGCTTTGGACGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAACGCCAAATGTCATGGTTCAATTTGTTCTGTATGATCATAATAATTTGATGTTTCCTCATATTATGCTATTTGCAATGGAGAACATACCTCCAATGAGGGAGCTCAGCCTTGATTATGGGGTAGTTGATGATGTTAAACCGAAGCTTGCTATATGTAACTG 2045 0.4518 MDSLSSVQDLNLLPVTRGNMPSNSSGATANPNAVAVPTTKAAGKETLTPMLVPKAEPSDEPLATLSQEAFFSTPSANGFSYSPSSAFSSGDFTFSDTTGASPDEGNLYSEFCRISELFRAAFAKGKEQLGGEGTGLDSKTGAIVPVPEQSQNAPVVVSPKPKPRQKELVRVTDLRIADQRHFRDVMRRTRLIYDSLRVLATVEEERRSEFACQKRLRGDLRAASLMRNRGMWLNRDKRIVGSIPGIDIGDLFFFRMELVVVGLHGQAQAGIDYLPGSMSSNGQPIATSVIVSGGYEDDEDGGEEIVYTGHGGQDKYSRQCEHQKLEGGNLALERSMTYGIEVRVIRGIKYEGSVASKIYVYDGLYKIIDCWFDVGKSGFGVYKYKLMRIEGQPEMGSMILRRAAALRMNPYADKLPYVSLDLSNKRESVPVRLFNNIDSAYDPLRFEYLLRTTFPPFVISKNGTGCECVSGCTEGCLCAMKNGGEFAYNMSGFLVRGKPVIFECGPFCSCPPECRNRVTQKGFKHQLEVFRSRLTGWGVRSLNLIHAGSFICEYTGVVLTSEQAKILTMNGDKLIYPNRFPDRWADWGDVSQVFSDYVRPSFPTIPPLDFALDVSRMRNVACYMSHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPMRELSLDYGVVDDVKPKLAICN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03072 681 MobiDBLite consensus disorder prediction 1 35 - -
Bva06g03072 681 ProSiteProfiles SET domain profile. 525 668 IPR001214 GO:0005515
Bva06g03072 681 ProSiteProfiles YDG domain profile. 241 388 IPR003105 -
Bva06g03072 681 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 47 677 - -
Bva06g03072 681 Pfam SET domain 536 668 IPR001214 GO:0005515
Bva06g03072 681 Gene3D SET domain 401 681 IPR046341 -
Bva06g03072 681 ProSiteProfiles Pre-SET domain profile. 464 522 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva06g03072 681 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 47 677 - -
Bva06g03072 681 SMART G9a_1 236 392 IPR003105 -
Bva06g03072 681 Pfam Pre-SET motif 423 517 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva06g03072 681 SMART set_7 525 674 IPR001214 GO:0005515
Bva06g03072 681 Pfam SAD/SRA domain 240 392 IPR003105 -
Bva06g03072 681 Gene3D - 238 398 IPR036987 -
Bva06g03072 681 SUPERFAMILY PUA domain-like 222 399 IPR015947 -
Bva06g03072 681 SUPERFAMILY SET domain 412 670 IPR046341 -
Bva06g03072 681 SMART preset_2 419 509 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva06g03072 681 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 4 681 IPR025794 GO:0016571
Bva06g03072 681 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03072 Bva-Chr6 19024060 19028199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03072 159 669 Su(var)3-9 homologs AT5G04940 37.853 1.01e-103 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva06g03072 SAD_SRA 7e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03072 K11420 - pvy:116108901 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03072 06 19024060 19028199 Bva06g03072 06 19024060 19028199 ECH