Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03046 ATGGGTGACGTGGTATTGAGTGCTGAGGAAGTGGAAGTGATGGTGTCAGAGAGCGAAACCCAGAAGGAGAAGGTTAAGCAAGAGAGTGCAGCAGAGAGTAAAGGTGGTGAATTGAATGGGTTGATGAGGTGGGAGAAGTTCCTGCCGAGGATGACATTGACAGTGCTCTTGGTTGAAGCTGATGATTCGACTAGGCAGATTATAGCTGCGCTTCTCAGGAAATGCAGCTACAGAGTGGCTGCCGTTCCTGATGGCTTGAAGGCGTGGGAGATTCTGAAAGGAAGACCGCGCAACTTTGATCTTATACTGACAGAAGTGGAGTTGCCATCGATATCTGGCTATGCACTTCTAACATTAATAATGGAGCATGAGATTTGCAAGAACATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTCTACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCATCAGGAAAAATGAGCTCAGGAATTTGTGGCAGCATGTCTGGAGAAGGCAATCGTCAACCATTGTCGCAAATGGCCCCCAAGATGAGAGTGTCCTACAACAGAAGGTCGAAGCCACTGCTGAAAATAATGCTACTAGTAGTCGTTCAAGTGGTGATGCTGCATGCATTCAAAGAAACAAGGAATTGATTGAGAAAGGAAGTGATGCTCAGAGTTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTGCTCCAGTGGATGATGTGCAGGAACTTTCTCAAGTAAACGAAGGTGAATCATATCCAACTGAAACAAAAACGCAAGAGGTTGAAACGGGCATTCATCTAGGTCAGACATCTAGTATGCATGACAGTCATGCTGGAGGATTGACTATCAATATCTGCAAAAATGATGAGACAAGAATAGCTCATGGCAAGGATGGTGGTCCAGAGCATCACAGGAGTAATATTACAAGTGGAAAGTTTGAGTTTTCTCCACAGTTGGATCTTTCCTTGAGAAGATCAGATCCCAGCATTTTCGAAAATCATGTCCCTGAAGAAAGGCATACCCTCATGCATTCTGATGCCTCGGCTTTCAAGCGATATACCAGCAGGCAGCTACAAGCTCCACCTGCAGTACTCATTAACTTCTGCAATCAACAAAGAGAACAGACAACAAATTGTGATAAAAATATCTCCAATGTTGCTGCAGGCTGTAACTCAGATAGTTCAAAACCTAGCATGCAAAAGAGTATCGTGTCTCCAGCTATTGCCTGGTCAAAAGAATCTGAACTTGCAACTTCACACTCCCAGCAACGACTTTCTCACCCGATTCCAGTCAAGGGTATAAGGTTAAATGATCTGTGCACGGCTTACGGTTCTGTACGGCCTCCAATCTTTCGTACACAGTCAGGTCCAGTGTCAATGCCAAGTGCAACTTCAGTTGGCCAGCATGAACCAACTTTCCAAGTGAACGCGTTTTATCACTCAAATATCAAAGACAGTAGTTCAGAGCAGCTTTATGAACCCCACAAGGCCACAAACCAGAATGTGCACATACAGGATCACAAATTAGAACATGTGGAGGATAGAGGGCATATCTCTTCAGCGACTGATCAAAGTGCATGCAGTAGTTTCTGTAATGGAAACGCAAGCCATCTTAACAGCTTTGGTTATGGAAGCAATTGTGGAAGTAACAGCAATTTTGATCAAGTTGTTGGTGTCAGGGCAGAATCAGAGGGTAAGAATGAAAACTTAACAAACAATGGAAGTTCTCATCGATCTGTTCAAAGAGAAGCAGCTCTAAACAAGTTCCgtttgaaaaggaaagaaagatgcTATGAAAAGAAGGTTCGGTATGAGAGCAGAAAGAAACTTGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGTGCATCCTGATTCCCTGGCTGCAGATAAAGATGGTTG 1928 0.4357 MGDVVLSAEEVEVMVSESETQKEKVKQESAAESKGGELNGLMRWEKFLPRMTLTVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEILKGRPRNFDLILTEVELPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTIVANGPQDESVLQQKVEATAENNATSSRSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESAPVDDVQELSQVNEGESYPTETKTQEVETGIHLGQTSSMHDSHAGGLTINICKNDETRIAHGKDGGPEHHRSNITSGKFEFSPQLDLSLRRSDPSIFENHVPEERHTLMHSDASAFKRYTSRQLQAPPAVLINFCNQQREQTTNCDKNISNVAAGCNSDSSKPSMQKSIVSPAIAWSKESELATSHSQQRLSHPIPVKGIRLNDLCTAYGSVRPPIFRTQSGPVSMPSATSVGQHEPTFQVNAFYHSNIKDSSSEQLYEPHKATNQNVHIQDHKLEHVEDRGHISSATDQSACSSFCNGNASHLNSFGYGSNCGSNSNFDQVVGVRAESEGKNENLTNNGSSHRSVQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDSLAADKDG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03046 642 SUPERFAMILY CheY-like 53 176 IPR011006 -
Bva06g03046 642 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 313 619 - -
Bva06g03046 642 ProSiteProfiles Response regulatory domain profile. 54 172 IPR001789 GO:0000160
Bva06g03046 642 ProSiteProfiles CCT domain profile. 588 630 IPR010402 GO:0005515
Bva06g03046 642 Coils Coil 8 28 - -
Bva06g03046 642 Pfam CCT motif 588 630 IPR010402 GO:0005515
Bva06g03046 642 Gene3D - 51 271 - -
Bva06g03046 642 Pfam Response regulator receiver domain 55 166 IPR001789 GO:0000160
Bva06g03046 642 SMART REC_2 53 168 IPR001789 GO:0000160
Bva06g03046 642 MobiDBLite consensus disorder prediction 223 242 - -
Bva06g03046 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 306 IPR045279 GO:0009736
Bva06g03046 642 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 9 306 - -
Bva06g03046 642 MobiDBLite consensus disorder prediction 615 642 - -
Bva06g03046 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 313 619 IPR045279 GO:0009736
Bva06g03046 642 CDD psREC_PRR 55 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03046 Bva-Chr6 18878080 18882078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03046 34 632 Response Regulator Gene Family AT5G24470 43.760 1.35e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Bva06g03046 Response_reg 2.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03046 K12130 - gmx:100784383 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01880 12 15145202 15149599 Bva06g03046 06 18878080 18882078 ECH
Bva06g03046 06 18878080 18882078 Bva06g03046 06 18878080 18882078 ECH