Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03043 ATGCATGTTTGCTTCAAATGTCGCTGTTGTAACACCCTGGCCAATTCTCAAACTGAAACGGGGAtggttttctctttctttcgaGAAATGGGAATTGATCATGAGGAAACAGAAACGCTTGTCAGTCACCCTGAGTTTACATTGGTGTCAATGGATTCAATGCGCGCTCGTGTTCTTTCTTTACAGTCAATTGGACTCGATCGTCTTGCTCTATATCACCTGATCACGAAGCGCCCAACTTCGTTAATAGCTAAGGAGGTTGACCCTTTACTACGTTTTCTGCGAGACGAGTTGCAAGGACAGCTTGAGCAAGCACAGATAAAGCGCCTGTTATCTGCTACAGAACCCAGATTCTTAGTGGGTTTTGATAAAAAAGTTGCCTTGCTTGTCAATCGAGGAATTCCCCGTGAAAAGATTGCCCATGTGCTCAACAATGTGAATTTGACAAAGGCGCTGTGTCATAGGTCAGTGGATGAAATTGATAGAATCATGGCTTTCTTGGACCCGTTTGGTGGCATTAGTTTAATTGTAAAGCGTCCAtcaattcttaattttgatttggatAGTCAGCTGATTCCAAGGACCAGATTGCTGGTAGAGCTTAGCGGAGGAGATGAGGATGCCACAGGAACCGTGCTGCGTAAGCTCCCGGCAATTTTGAATTACAGTGTGGAGCATGTGGAGGGCCATCTAGAGCTGTTGAGGTCTTTTGCTGGCCTAAATGATGAACAAATATTCAGGATAATGCTTGTGTTTCCTAATATCATTAGTGCTAGTAGAGAGAGGAAACTGCGTCCTAGAATACAGTTTCTTAAGGAATGCGGATTAAATTCTGAGGATATCTTCAAGTTCTTGATTAGAGCTCCCTTGTTTCTAGGTCATTCATTTCATGACAACATTGCGAATAAGCTTGTGTTTCTAGTCAAGATTGGGTATAAACATAGGACAAAGGACATGGCAATGGCAATGGCATCCACCACTAGGACAAGCTGTGAGAATTTGCAGAAAGTGATTGGTTTATTTTTGAGTTATGGATTTTCATTTGCAGACATTCTTGCTATGAGCAAGAGGCATCCTCAGATACTGCAGTACAAGCATATTTCTTCAGAGAAGAAGATAGAGTACTTGGTAGGTGAGCTGGGTCGTGATAAAGAGGAGTTACTTGTCTTTCCTGCATTCCTTGGTTATAAACTTGATGCCAGAATTAAGCTTAGatatgaagaaaagaagggtATTAGGGGGGAAGGAATGTCTCTCAATAAGCTTTTAACTGTTTCGACTGAGAGATTCACGggcaaaataaagaaagcaaaatcaGCACGTGCAATAGACAGTTTAAATGGGGAGGAAAGCAGTTA 1358 0.3999 MHVCFKCRCCNTLANSQTETGMVFSFFREMGIDHEETETLVSHPEFTLVSMDSMRARVLSLQSIGLDRLALYHLITKRPTSLIAKEVDPLLRFLRDELQGQLEQAQIKRLLSATEPRFLVGFDKKVALLVNRGIPREKIAHVLNNVNLTKALCHRSVDEIDRIMAFLDPFGGISLIVKRPSILNFDLDSQLIPRTRLLVELSGGDEDATGTVLRKLPAILNYSVEHVEGHLELLRSFAGLNDEQIFRIMLVFPNIISASRERKLRPRIQFLKECGLNSEDIFKFLIRAPLFLGHSFHDNIANKLVFLVKIGYKHRTKDMAMAMASTTRTSCENLQKVIGLFLSYGFSFADILAMSKRHPQILQYKHISSEKKIEYLVGELGRDKEELLVFPAFLGYKLDARIKLRYEEKKGIRGEGMSLNKLLTVSTERFTGKIKKAKSARAIDSLNGEESS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03043 452 Pfam mTERF 267 430 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 Pfam mTERF 173 309 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 PANTHER CGI-12 PROTEIN-RELATED 28 436 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 Gene3D Transcription termination factor 3, mitochondrial 10 206 IPR038538 -
Bva06g03043 452 Gene3D Transcription termination factor 3, mitochondrial 225 440 IPR038538 -
Bva06g03043 452 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 28 436 - -
Bva06g03043 452 SMART mt_12 173 204 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 352 383 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 37 67 IPR003690 GO:0003690|GO:0006355
Bva06g03043 452 SMART mt_12 210 241 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03043 Bva-Chr6 18864658 18867193 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva06g03043 mTERF 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03043 - - jre:109007533 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03043 06 18864658 18867193 Bva06g03043 06 18864658 18867193 ECH