Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03040 ATGTACGCGTGTCATGTTATTGAGCCTCGTCTGGTGCCACAAGAATCCTCTGCTTCCCGGTTGCTACTCAATCTTTGTTCTACGATGGCCTCCAGCGAGTTGGCTTGCACTTACGCCTCTTTGATTCTTCAGGATGACGGGATCGCAATCACcGCGGAGAAGATTAATGCTTTGGTGAAAGCAGCTAACGTGTGTGTGGAATCGTACTGGCCAAGCCTGTTTGCTAAGCTTgcagagaagaagaatattgaGGACCTCATCTTGAATGCTGGTTCAGGCGGTGCTGCTGCTGTAGCCGTCGCTGCTCCTGTTGGTGGTGCCGATACTGGTGGCGCTGGAAAAGCTGCAGCCCCTGTTGAGGAAAAGAAGGAAGAACCAAAGGAAGAGAGTGATGATGATATGGGATTCAGCTTGTTTGATTA 422 0.481 MYACHVIEPRLVPQESSASRLLLNLCSTMASSELACTYASLILQDDGIAITAEKINALVKAANVCVESYWPSLFAKLAEKKNIEDLILNAGSGGAAAVAVAAPVGGADTGGAGKAAAPVEEKKEEPKEESDDDMGFSLFD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03040 140 CDD Ribosomal_P1 33 139 - -
Bva06g03040 140 Hamap 50S ribosomal protein L12 [rpl12]. 34 140 IPR027534 GO:0003735|GO:0005840|GO:0006414
Bva06g03040 140 Pfam 60s Acidic ribosomal protein 50 139 - -
Bva06g03040 140 MobiDBLite consensus disorder prediction 117 134 - -
Bva06g03040 140 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 29 140 - -
Bva06g03040 140 MobiDBLite consensus disorder prediction 106 140 - -
Bva06g03040 140 Gene3D - 29 91 IPR038716 -
Bva06g03040 140 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 29 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03040 Bva-Chr6 18850464 18852179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03040 29 140 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 62.609 4.95e-40 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03040 K02942 - han:110877987 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01885 12 15169451 15170834 Bva06g03040 06 18850464 18852179 ECH
Bva06g03040 06 18850464 18852179 Bva06g03040 06 18850464 18852179 ECH