Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03039 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAATCTGCCTTCTGACATAAGGGAATCAGAAATTGAAGACCTATTTTACAAGTATGGTCGAATATTGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCTATTCGGGGTCGTGATGGCTACAACTTTGATGGGTGTCGATTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGCCGCGGTTATGGTGGTGGTAGTGGTGGTGGGGGCCGTTTTGGCATCTCACGCCGTTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCCTGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGTACTTTCGGCGTTGTTGACTACACTAATTTTGATGACATGAAATACGCTGTTCGGAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCAAGAGCTTTTATTCGGGTGAAGAAGTACGAGGGTAGTCCATCTAGGAGCCGCAGCCGAAGCCGCAGTAGAAGCAGAAGTCCCAAAAGAATTAGAAGTAAGTCGTTGGAGCGATCTGCTTCGATGTCCCGATCAAGATCCAGATCAGCATCACCTATTAAACCGTCCAGGCCAAGATCACGATCACGATCAAGATCAAGATCACTATCAAGATCCAGATCTGGGTCTCCTCGCCAGGCGCGGTCAGGCAGTGGTTG 791 0.4753 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGSGGGGRFGISRRSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNFDDMKYAVRKLDDTEFRNPWARAFIRVKKYEGSPSRSRSRSRSRSRSPKRIRSKSLERSASMSRSRSRSASPIKPSRPRSRSRSRSRSLSRSRSGSPRQARSGSG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03039 263 SUPERFAMILY RNA-binding domain, RBD 6 181 IPR035979 GO:0003676
Bva06g03039 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bva06g03039 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Bva06g03039 263 CDD RRM1_SF2_plant_like 8 79 - -
Bva06g03039 263 MobiDBLite consensus disorder prediction 220 235 - -
Bva06g03039 263 Gene3D - 2 111 IPR012677 -
Bva06g03039 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Bva06g03039 263 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 253 - -
Bva06g03039 263 CDD RRM2_SF2_plant_like 112 187 - -
Bva06g03039 263 Gene3D - 112 189 IPR012677 -
Bva06g03039 263 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bva06g03039 263 SMART rrm1_1 113 182 IPR000504 GO:0003723
Bva06g03039 263 MobiDBLite consensus disorder prediction 247 263 - -
Bva06g03039 263 MobiDBLite consensus disorder prediction 189 263 - -
Bva06g03039 263 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 253 - -
Bva06g03039 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bva06g03039 263 MobiDBLite consensus disorder prediction 81 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03039 Bva-Chr6 18844533 18849036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03039 9 174 Eukaryotic Initiation Factors Gene Family AT4G34110 25.581 2.08e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03039 K12890 - gmx:100800653 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03039 06 18844533 18849036 Bva06g03039 06 18844533 18849036 ECH