Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03037 ATGGCAGTTGCTGAAAATGCTGGGGCCATAATCGGCTCCTCCAATCAAAATTTGGACAACAGTGTAGTATCGACGGACTCAACTGGACCGAATGACCTTGAGAAATCGAAATCTAGAACTGGTTCCTTGGGAAGTGGTATCGAAGCCAATGTTCAGCCCATCAACGGCGATCAGAACCTGAACGCGGTCTTTAACCACCAGGACAGAGTTCCGACGACTATGTCAGTCCCCAACAGTAATTACAAGCCACAAATTGCTCAGATGCGAAATGGGTTCGACTCAAATGGGGTCCAGAACCAGCAGATGGTGGTAAACAATGGTGGATATGGGATTAACCAGATGTCGAACGGAGTCATGAATGGAGAGAACGGTGGTGAGAGTTTCAAGCGCGATATGAGGGATTTGGAAGAACTTTTGTCTAAGTTGAATCCCATGGCTGAAGAATTTGTGCCCCCATCGCTTACAAATAATCATGGGTACTTAGGAGGTGGTGGGTTCGGCTTCGCTAATAATTTTGTGCTGCACACTAATTATGGAAATGCTAGTGGGAATCCTAACAGAAGGAGGAAGAATGGATATAATCAGGGGAAGCGAAGACTGAATGAGAAAGTAGATATGGAGAAGCGAGAAGAGATGGTTAGGAGGACTGTCTACGTGTCTGATATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCAAATTCTATTCTTCGTTTTGCTTTTATTGAATTTACTGATGAAGATGGTGCAAGGGCTGCTTTGAACCTGTCCGGCACGATGCTTGGATATTACCCAGTGAGAGTGCTGCCATCAAAAACCGCCATTGCACCAGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAGCGGGAGATGTGCTCAAGAACCATTTATTGTACAAATATTGACAGGAAGGTTTCACAGGCTGATGTCAAACTCTTCTTTGAATCTCTGTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCATTCAACTAGAATTGCTTTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCTGCTCTGAACTGTAGCGGTGTGATTTTGGGTTCACTTCCGATAAGGGTAAGTCCATCAAAGACACCTGTCCGATCTCGTGCTCCTCGTACGACAATGCACTG 1202 0.4534 MAVAENAGAIIGSSNQNLDNSVVSTDSTGPNDLEKSKSRTGSLGSGIEANVQPINGDQNLNAVFNHQDRVPTTMSVPNSNYKPQIAQMRNGFDSNGVQNQQMVVNNGGYGINQMSNGVMNGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLGGGGFGFANNFVLHTNYGNASGNPNRRRKNGYNQGKRRLNEKVDMEKREEMVRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDRKVSQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRTTMH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03037 400 CDD RRM1_CID8_like 213 292 IPR034823 -
Bva06g03037 400 MobiDBLite consensus disorder prediction 13 54 - -
Bva06g03037 400 SUPERFAMILY RNA-binding domain, RBD 189 291 IPR035979 GO:0003676
Bva06g03037 400 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Bva06g03037 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Bva06g03037 400 MobiDBLite consensus disorder prediction 180 199 - -
Bva06g03037 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Bva06g03037 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Bva06g03037 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
Bva06g03037 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
Bva06g03037 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Bva06g03037 400 Gene3D - 299 396 IPR012677 -
Bva06g03037 400 Gene3D - 175 292 IPR012677 -
Bva06g03037 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Bva06g03037 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 400 - -
Bva06g03037 400 SUPERFAMILY RNA-binding domain, RBD 303 393 IPR035979 GO:0003676
Bva06g03037 400 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03037 Bva-Chr6 18828205 18832674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03037 214 383 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 2.78e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03037 - - aip:107622933 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01887 12 15182582 15186744 Bva06g03037 06 18828205 18832674 ECH
Bva06g03037 06 18828205 18832674 Bva06g03037 06 18828205 18832674 ECH