Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03036 ATGTCAGAGGGAAGGAAAAGTAAGATGATGAGTCCAAACAATATCAGACAAGTTGGTGATACAACCTATACGAAGATCTTCATAGGAGGATTGGCCTGGGAGACCAAGAGAGAAACATTGAGACACTATTTTGAGCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATTATTGACAGAAACACGGGAAGATCAAAAGGCTATGGCTTTGTGACCTTCAAGGACCCAGATTCTGCAATAAAAGCATGCCAGAATCCCTACCCTATGATTGATGGAAGAAGGGCTAATTGTAATCTTGCAGCTCGTGGAAAGGAGAAGTTGAGTGCAAATTCATGGACTATGGTGCCAATCCCTATACAAGGTCCCCCCACTTATTATAATCAGCACATGCCCCAGTATGCAATTCCTTATCCTCCCAACAGGTATCCTGGTTATCCTCCCCCACAAGAAACCTATGCGATGAATTACTATAATGTATATGGTGGGCAACAGCTTCCAATTCGTTGGCCACCACCATATCACCATCCCTTCTATGGCCTGAGACAGTTTGCTCCACCAGCTCCAGCATATATGAAAAAGGCACAATACCCTGATATGTCATCTCCTCCACTCTTCACAGTCGTTGGCTTACCAGAAGAACACATTTCATCTTCTCCTTCAATATCCAGCACTGCAGGACTAGCCACAGGAGCAGTAGCTGCACCAGGAATGCTTGGATCCTCCCCCGAACAAAAATCTTCTGCTTAAGCCGGAGAGAAAGGGAGGAAAAAGGGGAAACGACACTGTAATAAACCAGAAAGCTTCCGGAACAGGTGGTTTGATATTAGAGACTATACATAGATGAAATGAATCATGGATTCGTTCATTGTCTTGACACTTTGCCTTTAAGAATCTGGAAGCATACAAatcattattcaattttccatTTCCTATTTCTTGCAAATGAGATTATTATTACTAGGTC 961 0.4235 MSEGRKSKMMSPNNIRQVGDTTYTKIFIGGLAWETKRETLRHYFEQFGEILEAVVIIDRNTGRSKGYGFVTFKDPDSAIKACQNPYPMIDGRRANCNLAARGKEKLSANSWTMVPIPIQGPPTYYNQHMPQYAIPYPPNRYPGYPPPQETYAMNYYNVYGGQQLPIRWPPPYHHPFYGLRQFAPPAPAYMKKAQYPDMSSPPLFTVVGLPEEHISSSPSISSTAGLATGAVAAPGMLGSSPEQKSSAAGEKGRKKGKRHCNKPESFRNRWFDIRDYTMKIMDSFIVLTLCLESGSIQIIIQFSISYFLQMRLLLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03036 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Bva06g03036 315 SUPERFAMILY RNA-binding domain, RBD 10 106 IPR035979 GO:0003676
Bva06g03036 315 MobiDBLite consensus disorder prediction 237 261 - -
Bva06g03036 315 SMART rrm1_1 25 97 IPR000504 GO:0003723
Bva06g03036 315 Gene3D - 2 110 IPR012677 -
Bva06g03036 315 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
Bva06g03036 315 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
Bva06g03036 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Bva06g03036 315 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03036 Bva-Chr6 18825137 18827001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03036 20 105 C2H2 Transcription Factor Family AT2G19380 41.758 9.13e-16 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01888 12 15187882 15189900 Bva06g03036 06 18825137 18827001 ECH
Bva06g03036 06 18825137 18827001 Bva06g03036 06 18825137 18827001 ECH