Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03028 ATGTGTCTTCTTCTTATATTGCTAATCTTATCCTTCCATAATCACCTCCGTGTGGAAGGAACTGAAACTAAAAGCGAGAGAGATGCCTTGCTTTCTTTCAAATCCCAGGTGAGTGACCCTATGAATCGCCTCTCTAGCTGGGGAGCATCTGTGAATTCCTCTTATTGCTCCTGGTATGGAGTTTCATGCTTCAGAAATAGAAGGAATGGTACCAGAAACAACAGCAGGGGCAGAGTGAAATCTCTTAGTCTACCTGGACTCAGCCTCTCTGGTAAACTACCCTCTCAGCTATCCCAACTCACTTACCTACATTCACTTGACCTTTCCTACAATAAATTCGAGGGTCAAGTTTCCTTGCAATTTGCCCATCTCTCCCGCCTTAGATTGATTCAGTTAGCCGCCAACAATCTTAGTGGTAAACTTCCTGAAGGTTTAGGCCTTCTGAAACATCTCCAATTTATGGACTTGTCTGTCAATAATCTCACTGGTGAAGTCCCTAATTCATTTGGAAACCTCTCCTCTCTTGTTCATCTTGCCTTAGCAAGGAACAAATTCCTTGGTCAAATTCCATCTGAATTCTGTAATCTTCAGAgtcttcatcatcttcaaatCTCTGAAAATTGCTTCAATGGCCAGTTTCCTACTTGTATCTTCAATATCTCTTCCTTAGAGTTCATATCTGTAACAAAGAATAATCTATCAGGAACATTGCCACAAGATGTGGGTCTTACACTTCCAAACCTCAAGAATCTCTCTCTTGCTTCAAATAGGTTTCAAGGTGTGATTCCTAGTTCTATATCAAATGCTTCAAACCTTGAAATTTTCGATCTTGCGAACAATGAATTTCATGGATTGATTCCTCTATTTTCGAACATGAAAAGCCTCACCCGATTAGTTCTTGGAAACAACTACCTCTCTTCCACCACATCTTTGAATTATCAGCTGTTTGATTCCCTTAGAAACTCTACAAAGCTCACAGAGCTTATGATTTATTCTAACCAGCTGGCTGGGCAACTTCCAGCTACTGTTTCCAATATATCAAGAAATCTACAACATTTTTGTGTTGCAGATAACTCGTTGACTGGCAACATTCCTCATggaatgagaaattttaaaaacttgcaGTCATTGTCTTTGGAAATGAATGAGTTCACAGGAGAGTTACCGACAGAGATAGGAAAGCTATATCAACTGGTGCAAATATCAATATACCAAAATAGATTGTCTGGAGAAATTCCAGACATGTTTGGAAATTTAACTCAACTGTCTTATCTTTTACTGGGAAATAATCAGTTCACAGGTAAAGTTCCCATTAGCATTGGACAATGTCAGCGATTACGATATCTGTACCTAGGAATGAACAAGCTTCATGGGAGGACACCAGACGAGATTTTTAGTCTTCCTGGCTTGACCCAATTGTACTTGGCAGGGAATGGCGCCCTGCATGGTTCGCTTCCTTCTCAAGTCAGCTCCATGAAGCAACTTGAGATCTTGGACATCTCAGATAACCAGTTCTCAGGGCATATTCCAAAGGAAATATCTGAGTGTTCAAGTCTCAAGAGGCTCATATTGGCAAGAAACAACTTCAGTGGCTCAATCCCAAGTTCCATGGGGACTTTATTATCGTTGGAGACATTGGATTTATCTTCAAACAATCTCTCTGGTCCAATTCCTCAAAGTTTAGAAAAGCCCCAGTACTTGATGAGCTTAAACTTGTCTTTCAATCATTTGGAAGGCCAAGTTCCTATGAAAGGTGTTTTTATGAACTTTAGTTGGGCTTCTCTCCGAGGAAACAACAACCTCTGCAGCATTAATACGGAAATTGCACACATGTTGGGAATCTCTCTCTGTCCTGCTGGTAGAAAGAAGAGAACATTCTTACTCCCAACCATACTTGCAGTTGCAGGTGCTGCTGCTCTCTTCATTATGATACTCTGCATAGTGTGGGTGATGAGgtcaagaaagaagaaggtgaAAACTAGTTTATCATCTGCTCCTCTCAAGGGGTTTCCTCCAAATATATCTTATGCTGATATTCGGGTCGCTACAAACAATTTTGCAGCAGAAAACCTAGTAGGAAAGGGAGGCTTTGGCAATGTTTATAAGGGTATGTTTAGCATCAACACAGGTGATATCATCACACTTGCCGTGAAAGTTCTAGACTTTCAAAAAAGCAAAGCCTCCCGGAGTTTCAATGCAGAATGTGAAGCTTTGAGAAATGCTCGGCATCGGAACCTTGTGAAGGTTATCAGTAGCTGCTCCAGCGTTGATTATAAAGGAGATGAATTCAAAGCGCTGGTTATGCAATTCATGTGCTATGGTAATGTAGACACGTGGCTGCAccaagaagatgaagaatcaGGGTCGTTCTTGTCtttgttgcaaagattgaatATTGCTGTAGATGTTGCATCAGCCGTGGACTATTTGCACCATGACTGTGACCCACCAATAGTCCACTGCGATTTGAAACCTGCCAACGTCTTATTAGATGAAAATATGGTTGCACATGTTGGAGATTTCGGATTGTCAAGGATTCTTTCTCAAAATCCATCACAGAATGAAAGTAGCACTCTAGGACTCAAAGGTTCAATTGGCTATGTTGCCCCAGAATATGGTTTAGGTGGCAGAGCTTCAACTAGTGGAGATGTCTACAGTTTCGGAATACTACTACTAGAGATATTCACAGCAAGAAGGCCAACTGATGAGATGTTCAAAGAAGGTCTAAACTTAAGCAAATTTGCGGCTGGGATTGATGAGCATCAAGTACTGCATGTTGCTGATCCAAGGcttttaaagaattttgagCACTCATCACAAAGCACAAGCAATGCCTATTCTAGTGAAGGAAACAGTAGTGAGAGAAGAAGTTGGCAAATGAAAGCTGAAGAGTGTCTAGCTTCTGCCATAAGAGTTGGCCTATCCTGTGCGGCTCCATTACCCAAAGATCGTTCAACCATGAGAGTGGCATTAACTAAATTGCAAGCAATTAGGCAGTCTATGTA 3005 0.3983 MCLLLILLILSFHNHLRVEGTETKSERDALLSFKSQVSDPMNRLSSWGASVNSSYCSWYGVSCFRNRRNGTRNNSRGRVKSLSLPGLSLSGKLPSQLSQLTYLHSLDLSYNKFEGQVSLQFAHLSRLRLIQLAANNLSGKLPEGLGLLKHLQFMDLSVNNLTGEVPNSFGNLSSLVHLALARNKFLGQIPSEFCNLQSLHHLQISENCFNGQFPTCIFNISSLEFISVTKNNLSGTLPQDVGLTLPNLKNLSLASNRFQGVIPSSISNASNLEIFDLANNEFHGLIPLFSNMKSLTRLVLGNNYLSSTTSLNYQLFDSLRNSTKLTELMIYSNQLAGQLPATVSNISRNLQHFCVADNSLTGNIPHGMRNFKNLQSLSLEMNEFTGELPTEIGKLYQLVQISIYQNRLSGEIPDMFGNLTQLSYLLLGNNQFTGKVPISIGQCQRLRYLYLGMNKLHGRTPDEIFSLPGLTQLYLAGNGALHGSLPSQVSSMKQLEILDISDNQFSGHIPKEISECSSLKRLILARNNFSGSIPSSMGTLLSLETLDLSSNNLSGPIPQSLEKPQYLMSLNLSFNHLEGQVPMKGVFMNFSWASLRGNNNLCSINTEIAHMLGISLCPAGRKKRTFLLPTILAVAGAAALFIMILCIVWVMRSRKKKVKTSLSSAPLKGFPPNISYADIRVATNNFAAENLVGKGGFGNVYKGMFSINTGDIITLAVKVLDFQKSKASRSFNAECEALRNARHRNLVKVISSCSSVDYKGDEFKALVMQFMCYGNVDTWLHQEDEESGSFLSLLQRLNIAVDVASAVDYLHHDCDPPIVHCDLKPANVLLDENMVAHVGDFGLSRILSQNPSQNESSTLGLKGSIGYVAPEYGLGGRASTSGDVYSFGILLLEIFTARRPTDEMFKEGLNLSKFAAGIDEHQVLHVADPRLLKNFEHSSQSTSNAYSSEGNSSERRSWQMKAEECLASAIRVGLSCAAPLPKDRSTMRVALTKLQAIRQSM 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03028 1001 PANTHER - 16 996 - -
Bva06g03028 1001 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Bva06g03028 1001 Pfam Protein tyrosine and serine/threonine kinase 689 906 IPR001245 GO:0004672|GO:0006468
Bva06g03028 1001 SUPERFAMILY Protein kinase-like (PK-like) 661 994 IPR011009 -
Bva06g03028 1001 ProSitePatterns Protein kinases ATP-binding region signature. 692 718 IPR017441 GO:0005524
Bva06g03028 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Bva06g03028 1001 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Bva06g03028 1001 Pfam Leucine rich repeat 518 577 IPR001611 GO:0005515
Bva06g03028 1001 PANTHER OS04G0122200 PROTEIN 16 996 - -
Bva06g03028 1001 SUPERFAMILY L domain-like 348 605 - -
Bva06g03028 1001 SUPERFAMILY L domain-like 24 307 - -
Bva06g03028 1001 Gene3D Phosphorylase Kinase; domain 1 670 770 - -
Bva06g03028 1001 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Bva06g03028 1001 Gene3D Ribonuclease Inhibitor 289 610 IPR032675 -
Bva06g03028 1001 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Bva06g03028 1001 ProSiteProfiles Protein kinase domain profile. 686 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g03028 1001 SMART LRR_typ_2 419 443 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 292 318 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 148 171 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 172 196 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 245 268 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 371 395 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 540 564 IPR003591 -
Bva06g03028 1001 SMART LRR_typ_2 492 516 IPR003591 -
Bva06g03028 1001 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515
Bva06g03028 1001 Gene3D Transferase(Phosphotransferase) domain 1 771 1001 - -
Bva06g03028 1001 SMART serkin_6 686 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03028 Bva-Chr6 18802396 18805749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03028 16 999 Receptor kinase-like Gene Family AT3G47570 39.194 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva06g03028 PK_Tyr_Ser-Thr 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03028 - - gmx:100776054 1212.59