Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03020 ATGATGGAGGGTGATGGGCATATTCAAGAGTCAAGAGAGGAAAACGTTGAAAGCACCACCAGTTCACAGCCACCTCAGAAtccaaggaagaaaaagaacaagatagagaaaaagaggagGTTTAGTGATGAACAGATAAGATCACTTGAATGCATATTTGAGTCAGAATCAAAACTGGAGCCAAGGAAGAAGCTGCAGCTAGCGAGAGATCTTGGGTTGCAGCCACGCCAAGTTGCTATATGGTTTCAGAACAAAAGAGCCAGATGGAAATCAAAACGCACAGAGCAAGAATACAGGAAACTCAAAGATGaatatgacaatctagcaTCTCGGTTTGAGAActtaaagaaagagaaggagtCCTTGCAAATAGagTTGCAGAAGCTAAGTGATAGAATGAAGAAATCTGTTGAtgggagaagagaaagcaCAACTTGGGTTGCCAAGGATAACAACAAAGAGGATGGTGGGTCAGGCAGCGGACACAGCAATTGGAGAGGTGATGAAGCAAAGCCAAGCTATTCAAATGAAGGTTTGGAGGACAGAGAAGCCATGCATTCacatgatgaaaatgaaaagagttATGAGGACAGAGAACACCAAATTCAGAAAATGGAGAAGCATGGGAATGAGCATGTTGAGGTTCCCTTGGCATCGGTTGAAAAATGGTATAGTGTGGACCCTAGTAGTCTTCTTGATCAGTCTTGTAGCAGTTCACAATGGTTAGATTTCTGGACTTG 740 0.3689 MMEGDGHIQESREENVESTTSSQPPQNPRKKKNKIEKKRRFSDEQIRSLECIFESESKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKRTEQEYRKLKDEYDNLASRFENLKKEKESLQIELQKLSDRMKKSVDGRRESTTWVAKDNNKEDGGSGSGHSNWRGDEAKPSYSNEGLEDREAMHSHDENEKSYEDREHQIQKMEKHGNEHVEVPLASVEKWYSVDPSSLLDQSCSSSQWLDFWT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03020 246 CDD homeodomain 41 93 IPR001356 GO:0003677
Bva06g03020 246 SUPERFAMILY Homeodomain-like 20 92 IPR009057 -
Bva06g03020 246 Gene3D - 16 99 - -
Bva06g03020 246 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Bva06g03020 246 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Bva06g03020 246 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Bva06g03020 246 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Bva06g03020 246 SMART HOX_1 35 96 IPR001356 GO:0003677
Bva06g03020 246 Pfam Homeodomain 37 90 IPR001356 GO:0003677
Bva06g03020 246 MobiDBLite consensus disorder prediction 1 41 - -
Bva06g03020 246 MobiDBLite consensus disorder prediction 132 213 - -
Bva06g03020 246 MobiDBLite consensus disorder prediction 132 149 - -
Bva06g03020 246 MobiDBLite consensus disorder prediction 173 213 - -
Bva06g03020 246 Coils Coil 84 132 - -
Bva06g03020 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 246 IPR045224 GO:0003700
Bva06g03020 246 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Bva06g03020 246 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03020 Bva-Chr6 18758474 18759707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03020 38 246 Homeobox Transcription Factor Family AT2G46680 40.343 6.74e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva06g03020 Homeodomain 7.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03020 K09338 - gmx:100793260 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01901 12 15245896 15247294 Bva06g03020 06 18758474 18759707 ECH
Bva02g02090 02 21602977 21604381 Bva06g03020 06 18758474 18759707 ECH
Bva08g01965 08 13187271 13188684 Bva06g03020 06 18758474 18759707 ECH
Bva06g03020 06 18758474 18759707 Bva06g03020 06 18758474 18759707 ECH