Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03019 ATGATCGGCCCAATagataaaaacaacaaaaacaaaaacgaaAACCCTAAATCTGAAAATTCTGCGTACATAAGGAATTCCCTCGTTACAGAAACCATTATCGCCGAAAGGGAAAGTGGAAGACCTTCGAAAATGCAGATCTTCGTGAAAACCCTGACTGGGAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACTATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCACCGGACCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACGCTGGCCGATTATAACATTCAAAAAGAATCAACATTGCATCTCGTTTTGAGGCTTCGTGGTGGCATTATAGAGCCATCATTGATGGCTTTGGCCCGGAAATATAACCAGGACAAGATGATTTGCCGCAAGTGTTATGCACGCTTACACCCACGTGCGGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAATCAGCTGAGGCCGAAGAAGAAGATCAAGTA 518 0.4382 MIGPIDKNNKNKNENPKSENSAYIRNSLVTETIIAERESGRPSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03019 172 Gene3D - 40 123 - -
Bva06g03019 172 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 45 169 - -
Bva06g03019 172 SUPERFAMILY Zn-binding ribosomal proteins 120 171 IPR011332 GO:0006412
Bva06g03019 172 Pfam Ribosomal L40e family 122 171 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bva06g03019 172 PANTHER UBIQUITIN 45 169 - -
Bva06g03019 172 SUPERFAMILY Ubiquitin-like 41 120 IPR029071 -
Bva06g03019 172 PRINTS Ubiquitin signature 76 96 IPR019956 -
Bva06g03019 172 PRINTS Ubiquitin signature 55 75 IPR019956 -
Bva06g03019 172 PRINTS Ubiquitin signature 97 118 IPR019956 -
Bva06g03019 172 Pfam Ubiquitin family 47 118 IPR000626 GO:0005515
Bva06g03019 172 Gene3D - 124 172 IPR038587 -
Bva06g03019 172 CDD Ubl_ubiquitin 45 120 - -
Bva06g03019 172 ProSitePatterns Ubiquitin domain signature. 71 96 IPR019954 -
Bva06g03019 172 ProSiteProfiles Ubiquitin domain profile. 45 120 IPR000626 GO:0005515
Bva06g03019 172 MobiDBLite consensus disorder prediction 1 22 - -
Bva06g03019 172 SMART Ribosomal_L40e_3 121 172 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bva06g03019 172 SMART ubq_7 45 116 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03019 Bva-Chr6 18755109 18757197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03019 45 172 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 8.44e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03019 K02927 - pavi:110749633 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03019 06 18755109 18757197 Bva06g03019 06 18755109 18757197 ECH