Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03005 ATGGCAAAAGAGTTGATCATTCACGCCTCACCCATACCGGCATCCGAGTTACTTTTCCTCACTGTTGTTGCTATAGCTGATACTGTCAAAGCAGCTAATGGGGTTGTCATTcagaaggaaaattttaagaaattctcAACTTACTTGGAGAAGATCCCATCTATGTTAAAGGCATTATCAAAGGAAGACTTGCACTTTTCAGAGAGCTGGAAAAATGCTGTGGATGGTCTCAACCGAGAGGTTAAAGTTGCTAAGCAGCTTGTTTCTGATTGCAGCAGTAAAAACaagatttatcttttaatcaaTAGCAGAAAGATTGTAAAGCGATTGGAGCTTTGTACAAAAGATATTAGCCGGGCAATAAGCCTTATCCCATTGGCCTCTTTGGATGTTTCATCTGGTCTAAGTAAACAGATAAGCGATCTATGCCAGAAAATGTTGGATGCTGAGTATCAAGCAACTGAAACAGACGAGGAGATTTTGGGAAAAATTGAACTAGCAATTCGTGACGGCAATGCTGATCGATCTTACGCAAATCAGTTGCTAGCTTGTATTGCAGATGCCATCGGGATCTTTACTGAACATGCGGCTTTAAAGAGAGAATTTATTGAGCTAAAaagtgaaatagaaaatgcCAAGTCAAGAAAGGATATGGCAGAAGCTCTATATTTGGAGCAGGTTATTGCATTGCTTGAAAAGGCTGATTCTATAACTTCAGCgcaagagaaggagaagaagtaCATTGAAAAGCGAAATTCTTTGGGAAGGCAACCATTGGAGCCTTTGCAGTCATTTTACTGTCCCATCTCTCTTGAAATTATGGTAGACCCCGTGGAGACTTCATCTGGCAAGACATTTGAGAGAAGTGCCATAGAGAAGTGGCTTGGAGAAGGGAAGAGTCACTGTCCCTTGACCATGTTGCCGTTGGATACTTCTATTTTAAGGCCCAATAAGACGCTTCGACAGTCAATTCAAGAATGGAAAGACAGGAACACCATCATTACCCTTTCTTCTATCAAATCCCAACTCCAAACAAATGAAGAACGGGAAATGATTCAATCCTTAGTCAAACTTCAGGATCTATGCATGGAAAGAGAGTTGCACCGAGAATGGATGAAAATGGAGAATTACTTTGCAGTTCTTATCGAACTCCTTGGTGGAAAAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATTCTATCTTTACTTGCAAAGGACAATGAAGGGAACCAGGAAGATATTGCTCAAGCAGATAATGCACTTGAATCAATTGTTCATTTGCTTGCACGCCAGATTGAAGAAAGCAAGTTGGCATTGGAGTTGCTTTTGGAATTATCTAGAAGTCATGCAGTGCGTGATCTCATAGGGAACGTTCAAGGAAGCATACTTCTCCTAGTGACAATGTCAAGAAATGATGACACTGAAGTTACCAGAAATGCACATGAGCTGCTGGAGAACCTATCCTTCCTTGACAAGAATGTCGTAGAAATGGCAAAGGCAAACTATCTCAAACCTTTGCTGCGGAATCTTTGTTCAGGATCAGAAGACATGAAGATAACCATGACTGAAATTTTGTCAGAAATTACTTTGACTGACCAgaataaattatctataatGAAAGATGGGGCGCTGGGGCCCCTTCTTCAGTTGCTCTTAAACGATGATATGGAAATCAAAAAAGTGGCTGTCAAAGCTCTCCAGCAGCTCTCAAGTTTGCCAGAGAATGGCCTTCAGATGATTAAGGAGGGTGTTGCTGGACCACTATTTGAACTGCTATATCGTCACAGTTTACAGTCACCAGCTCTGGGTGAAGAGGTAGCTGTCACAATATTGCATCTTGCCATATCAACCACTCACCAAAAAGCAGATGAAGGACAGATCTCATTGATAGATTCCGAGGAAGACATTTTTAAGTTCTTCTCTCTTATTTCCTTTGCTGAACCAGAAATACAAATCAAGATTCTCAGAGCCTTCCAGGCAATGTGTCAATCTCCCTCTGGTTTCACCATCAGAACAAGGTTGAGACAGATCTCAGCTGCTCGAGTATTGGTTAACTTGCTAGAACTCGATAACCAACCAGTGAGGGCCAATGCAGTGAAGCTGTTATATTGCTTGACAGAAGATGGAGATAGCAGCAACTTTTCATCACATGTGACTGAAAAGTGCATTAAGGTTTTGCTAACCTTCATTCATATGTCTGACGACCCAGAAGAGACGGTTGCTGCTATGGGTACTATCTCTAGACTTCCACAGGACCAACAAATAACACAGTGGCTTTTAGATTCTGGGGCACTTCAAACTGTTTTGGCTTGTCTCACAGATAGGCATAAGCATGCCTCACATAAAAGGTATGTAACAGAGAACTCTGCCCAAGCTCTCTGCCGTTTTACTGTCTCAACAAATCTGGAGTGTCAGAAGAGAGTAGCTCAAGAAGGCATCATTCCCGTGCTGGTGCAATTGCTAATTTCTGGAACACCTTTGGCAAAACAAAGTGCAGCCATTTCACTCAAGCAGTTATCTGAAAGTTCATACATCTTGAGCAGGCAAATAAAGAATCAGGGTCTATTCAAATGCTGCTTCGCAGGCCGAGAAATTGGCTGCCCAGCACACCTAGGAACCTGTACAGTTGAGTCTTCATTCTGCATCGTAGAGGCTAAAGCTTTGGAACCCCTAGTGAGGATGCTTGCAGAACCAGATGCTGGAACATGTGAAGCTTCATTAGATGCACTATTGACATTGCTTAATAGTGAAAGACCGCAGAGTGGAAGTAAGGTACTTGCAAATGCAAATGCTATTGCTCCAATGATCAAGTTACTGGGTATTCCAGCTGCCAGGTTGCAGGAAAAAACTCTAATGGCCTTGGAACGAATTTTTCAAGTAGATGAAATAAAAGCGAAGTATAAATCTATGGCGACAATGCCCTTGGTGGAAATAACCCAGAGTAAAGACAGTCGTTTTAGAAGTCTTTCTGCCAAAGTCCTTGGTCAATTGGGTGTACTTGATAAACaatcatcttattttta 3023 0.4062 MAKELIIHASPIPASELLFLTVVAIADTVKAANGVVIQKENFKKFSTYLEKIPSMLKALSKEDLHFSESWKNAVDGLNREVKVAKQLVSDCSSKNKIYLLINSRKIVKRLELCTKDISRAISLIPLASLDVSSGLSKQISDLCQKMLDAEYQATETDEEILGKIELAIRDGNADRSYANQLLACIADAIGIFTEHAALKREFIELKSEIENAKSRKDMAEALYLEQVIALLEKADSITSAQEKEKKYIEKRNSLGRQPLEPLQSFYCPISLEIMVDPVETSSGKTFERSAIEKWLGEGKSHCPLTMLPLDTSILRPNKTLRQSIQEWKDRNTIITLSSIKSQLQTNEEREMIQSLVKLQDLCMERELHREWMKMENYFAVLIELLGGKNREIRKRVLLILSLLAKDNEGNQEDIAQADNALESIVHLLARQIEESKLALELLLELSRSHAVRDLIGNVQGSILLLVTMSRNDDTEVTRNAHELLENLSFLDKNVVEMAKANYLKPLLRNLCSGSEDMKITMTEILSEITLTDQNKLSIMKDGALGPLLQLLLNDDMEIKKVAVKALQQLSSLPENGLQMIKEGVAGPLFELLYRHSLQSPALGEEVAVTILHLAISTTHQKADEGQISLIDSEEDIFKFFSLISFAEPEIQIKILRAFQAMCQSPSGFTIRTRLRQISAARVLVNLLELDNQPVRANAVKLLYCLTEDGDSSNFSSHVTEKCIKVLLTFIHMSDDPEETVAAMGTISRLPQDQQITQWLLDSGALQTVLACLTDRHKHASHKRYVTENSAQALCRFTVSTNLECQKRVAQEGIIPVLVQLLISGTPLAKQSAAISLKQLSESSYILSRQIKNQGLFKCCFAGREIGCPAHLGTCTVESSFCIVEAKALEPLVRMLAEPDAGTCEASLDALLTLLNSERPQSGSKVLANANAIAPMIKLLGIPAARLQEKTLMALERIFQVDEIKAKYKSMATMPLVEITQSKDSRFRSLSAKVLGQLGVLDKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03005 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1007 - -
Bva06g03005 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Bva06g03005 1007 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1007 - -
Bva06g03005 1007 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Bva06g03005 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Bva06g03005 1007 SUPERFAMILY RING/U-box 252 333 - -
Bva06g03005 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Bva06g03005 1007 SUPERFAMILY ARM repeat 784 1001 IPR016024 -
Bva06g03005 1007 Gene3D - 18 128 IPR036537 GO:0007166
Bva06g03005 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 343 IPR013083 -
Bva06g03005 1007 SUPERFAMILY ARM repeat 533 851 IPR016024 -
Bva06g03005 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Bva06g03005 1007 Gene3D - 344 860 IPR011989 -
Bva06g03005 1007 SUPERFAMILY ARM repeat 338 616 IPR016024 -
Bva06g03005 1007 Pfam MCAfunc domain 28 159 IPR045766 -
Bva06g03005 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 406 447 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 448 489 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Bva06g03005 1007 SMART arm_5 490 530 IPR000225 GO:0005515
Bva06g03005 1007 Coils Coil 195 222 - -
Bva06g03005 1007 Gene3D - 865 1005 IPR011989 -
Bva06g03005 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03005 Bva-Chr6 18694332 18698829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03005 263 1007 U-box Gene Family AT1G20780 27.181 2.32e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03005 - - gmx:100818273 1350.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03005 06 18694332 18698829 Bva06g03005 06 18694332 18698829 ECH