Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02972 ATGAATTATGGCAGGCTCGGAGCATCCGACCCGGGTGGATCATCCCGGCGATCCACCCTATCAGAAGTTCCCACGCCCCCCAACAAGAAGTCCAACCGGAAGTGGGCTATCATTTTGTCAGTCATTGCTGTTGGTTTAATTGTTGCCTCCGCTGTCTCCGCGGCGGTCGTGATCACCAGCCGGACCCGTGGGTCTGGTCAAAACGGGCCGGGCATCCGACAGCCCACGCAGGCAATTTCTCGGACCTGCAGCAAAACCAGGTTCCCATCACTCTGTGTCAACTCACTCCTTGACTTCCCGGGTTCAACCACGGCATCGGAGCAGGACCTCGTCCACATTTCCTTTAATATGACCCTCCAGCACTTTAGCAAAGCTCTCTACTCCTCCACCGGGATCAACTTCGCCCAGATGGATCCGCGCGTACAGTCGGCGTACGAGGATTGCCTCGAGCTCCTGGAGGACTCCGTGGACGCCCTCGCTCGCTCCCTCACCTCCGTCGCGCCATCTGACGGCGGCGGCAATCCAAGGGGATCCACGGAGGACGTGCTGACTTGGCTCAGTGCCGCCCTCACGAATCAAGACACGTGTACCGATGGGTTCTCGGACATAAGCGGGACCGTCAAGGATCAGATGGGCAATAATTTGAGGGACCTGTCGGAGCTCGTGAGCAACTGCCTCGCGATTTTCTCGGCGAGTGGCGGGGACGACTTTGCTGGAGTTCCCATCCAGAACAGGAGAAGACTAATGGAAGTGAATGCCGACATCTCGGGTAATTTCCCGAAATGGttaaatagaagagaaagaaaattgctcAGTTTACCGGTATCGGCGATACAAGCCGACATAACTGTATCAAAAAACGGGAGTGGAACGGTGAAGACCATCGCAGAGGCAATCAAGAAGGCACCCGAGCACAGTGCCCGCCGGTTCATTATCTACGTGAAAGAAGGAAGGTACGAAGAGAATAATTTAAAGGTGGGGCGAAAGAAAACGAACCTTATGTTCATAGGCGACGGGAAGGGTAAGACAGTCATTACAGGCAAAAAAAGTGTCCAGGATGGGCTCACCACTTTCCACACGGCATCCTTCGCTGCAACCGGCGCTGGCTTCATTGCTCGGGACATCACGTTTGAGAACTACGCCGGAGCGGCGAAGCACCAAGCGGTGGCCCTTCGTGTCGGAGCTGATCATTCGGTGGTATACCGCTGCGACATCCTCGGATACCAAGACTCATGCTATGTCCACTCCAACCGACAGTTCTTCCGTGAATGTAACATTTTCGGAACCGTAGATTTCATATTTGGCAATGCCGCTGTGGTTTTCCAAAACTGTAGCCTTTATGCCAGAAAGCCCATGTCCATGCAAAAGAACACCATCACAGCCCAAAACCGGAAAGACCCGAATCAGAACACGGGTATATCCATCCACAATTGCCGTATCCTTGCTGCCCCTGAGCTTCAGAAATCAAAAGGAAGCTTCCAAACATATCTTGGCCGTCCGTGGAAACTATACTCCAGAACCGTGTACATGTTATCATTCATGGGAGATCATATCCATCCACGTGGATGGCTGGAGTGGAATTCAACATTTGCCTTAGATACACTCTACTATGGTGAGTACATGAATTACGGGCCGGGTGCAGCCGTTGGGCAACGGATCAAATGGCCGGGTTATCGGGTCATCACGTCCGCCTCGGAGGCAAATAGATTCACGGTCGGTTCATTCATATCAGGTTCCGCATGGTTGCCGTCAACCGGAGTGGCATTTTTGGCCGGCTTGTCGACCTG 1787 0.5294 MNYGRLGASDPGGSSRRSTLSEVPTPPNKKSNRKWAIILSVIAVGLIVASAVSAAVVITSRTRGSGQNGPGIRQPTQAISRTCSKTRFPSLCVNSLLDFPGSTTASEQDLVHISFNMTLQHFSKALYSSTGINFAQMDPRVQSAYEDCLELLEDSVDALARSLTSVAPSDGGGNPRGSTEDVLTWLSAALTNQDTCTDGFSDISGTVKDQMGNNLRDLSELVSNCLAIFSASGGDDFAGVPIQNRRRLMEVNADISGNFPKWLNRRERKLLSLPVSAIQADITVSKNGSGTVKTIAEAIKKAPEHSARRFIIYVKEGRYEENNLKVGRKKTNLMFIGDGKGKTVITGKKSVQDGLTTFHTASFAATGAGFIARDITFENYAGAAKHQAVALRVGADHSVVYRCDILGYQDSCYVHSNRQFFRECNIFGTVDFIFGNAAVVFQNCSLYARKPMSMQKNTITAQNRKDPNQNTGISIHNCRILAAPELQKSKGSFQTYLGRPWKLYSRTVYMLSFMGDHIHPRGWLEWNSTFALDTLYYGEYMNYGPGAAVGQRIKWPGYRVITSASEANRFTVGSFISGSAWLPSTGVAFLAGLST 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02972 595 MobiDBLite consensus disorder prediction 1 30 - -
Bva06g02972 595 MobiDBLite consensus disorder prediction 12 28 - -
Bva06g02972 595 PANTHER PECTINESTERASE 27 593 - -
Bva06g02972 595 SMART PMEI_2 74 228 IPR006501 GO:0004857
Bva06g02972 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 230 IPR035513 -
Bva06g02972 595 SUPERFAMILY Pectin lyase-like 276 592 IPR011050 -
Bva06g02972 595 CDD PMEI-like_3 83 231 - -
Bva06g02972 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 231 IPR035513 -
Bva06g02972 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 229 IPR006501 GO:0004857
Bva06g02972 595 Pfam Plant invertase/pectin methylesterase inhibitor 78 228 IPR006501 GO:0004857
Bva06g02972 595 Gene3D - 275 593 IPR012334 -
Bva06g02972 595 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Bva06g02972 595 Pfam Pectinesterase 281 578 IPR000070 GO:0030599|GO:0042545
Bva06g02972 595 PANTHER PECTINESTERASE 27 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02972 Bva-Chr6 18531743 18535157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02972 1 594 Carbohydrate Esterase AT5G53370 65.552 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02972 - - gmx:106796002 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02972 06 18531743 18535157 Bva06g02972 06 18531743 18535157 ECH