Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02967 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGTTGCAAACTCGGTGACTCGGTCGGGGATGACGATGACACCTCTGCTGCTCGGAAGAAGAGGAGGACTAACGGGTATTACCCCTTGAATCTTCTCGGCGATGTCGCTGCTGGCATAATCCCTGTGAGCTTTCATGGTTTGCTGAGTGCTGGTGTATCTGAGAAGGGCTTTTCTGCATCGTGGTGCACCGAAGTTTCGTGTTCCCCTGGTGAAGTGGAGTCGAAGTCCAAGGGTGAGAACTCTGTCAGAGCAAAGATAAATCGGCCTGCAGAGGTTTCACGGCCACCGCTCGTGAGGACGTCAAGAGGTAGAGTTCAGGTACTCCCTTCACGTTTTAACGACTCCGTTATCGAGAACTGGAAGAAAGAGACTAAGACCAGCGTGCGTGATTATAGTTTTGATGAGGAATTTGAATgtaaaaaggagaaatttagttttaaGACACCAAAGTCatacaatcaaaatttaaagaaagggAGAAACGATGAGAAAATTGGGTTCAAGTCTCGCAAATACTCGACATTGTTTGAAGAAGAGCCAAGAGAGGATGGGCGTGTCCGGTATAAGAATTTTGATGTTAGGAAGTATTCAACTCCACGTACTACACTTGCTTCAATGCGTGAGCAATCAGTTGAAGATGAGAAAGGCCGATTTATAGATATAGAGGAAGTTGATTTAACCGGCAGGGACAGGTTTCCAAAGAAGAAtgacaagaagaaagatgGACTATATGGACCAGAAGACTTCTATGCAGGTGATATAGTGTGGGCCAAAGCAGGGAAGAGGGAGCCTTTTTGGCCAGCCATCGTTATTGATCCAATGTCTCAGGCACCTGAGCTGGTTCTGAGGTCTTGTATAGCAGATGCAGCGTGTGTGATGTTTCTTGGGTACTCTGGGAATGAAAACCAAAGGGACTTTGCGTGGGTTAAGCATGGGATGATTTTTCCATTTATAGATTATGTAGACAGGTTTCAGGGGCAGACTGAATTGAGTTACTATAAGTCATGTGATTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGATTTACGGAGAAGTTGATTGCAGATATAAATACAGCAGCTGGTAACACAGGTTATGAtgaaactattttaaaaagttttctgGAGGCCCCTGGTTCAAACCAAGACGCAGGCTATCACTTTCTGAATCAGGACCTATTTGATAGGAAAAAAGACATGCGACCCTGTGAAGCCTGTGGAATGGACCTTTCTTTCAAAatgtcaaagaaaatgaaggattCGGCACCTGGTGGCCAATTTCTTTGTAAAACATGTGCCAGGttaacaaaatcaaaacattatTGTGGCATATGCAAGAAAATTTGGAATCATTCGGATAGTGGAAGTTGGGTACGATGTGATGGATGTAAGGTGTGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTTAAGAATCTTGGAGGCACTGATTATTACTGCCCTACTTGCAAAGCaaagtttgattttgaattatcTGATTCAGAAAAGTCACAGCCAAAAGTGAAATTGAACAAAAACAGTGGGCAGCACAATGGGCAGCTAGTTCTGCCAAACAAGGTCACGGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCTTTCACTTAGTTGTGTGCAAGTGTGGATTTTGTGGGACAGAAAAGCAAGCCCTTAGTGAATGGGAACGGCACACTGGTTCCAAATCAAGAAATTGGAGAACAAGTATTAGGGTGAAAGGCTCCATGCTGCCACTGGAACAATGGATGCTGCAGTTGGCTGAATTCCATGCCAATGCCCTAGTTTCTGTCAAACCTAAAAAACCTTCTTCAAAAGAAAGGAAGCAGAAGTTGCTAACATTTTTGCAAGAGAAGTATGAACCTGTTTATGCAAAGTGGACAACAGAACGGTGTGCTGTATGTAGATGGGTTGAAGATTGGGATTacaacaaaattatcatttgCAATAGgtgCCAAATAGCTGTTCATCAAGAGTGCTATGGCGCAAGAAACGTTCGGGATTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGTGAGTGTTGTCTTTGTCCTGTAAAAGGTGGAGCTCTAAAGCCAACTGATATTGACCCATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCAGAAGTCTCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTCTGGGTATTCTGAGTATTCCGTCAAACTCTTTTGTGAAGATTTGTGTAATTTGTAAGCAAATTCATGGTTCTTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCAGGGTACCGAATGGAGCTACATTGCACGGAAAAAAATGGTAAACAGACAACCAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGATACTGTTTTGATTATACAAACCCCTCTTGGGGTTATTTCGGCCAAAAGCCTTctccaaaataagaaaaaatctgGGTCAAGGTTAATTTCATCTAATAGAATAAAGCCAGAAGATACTCCTCCGGTAGGTGACACTGGGGAAGAGCCATTCTCCGCCGCTAGGTGCCGCATCTTTCAAAGAACGAATCCTAGCAAAAAGAGAGCAGCAGATGAAGCCGTTGCTCATCGAGTGAAGGGTCACTGCCATCATCCTTTAGATGCAATACGGAGTTTAAATGCTTACAGAGTggtagaggaagaagaagaagctcagacattttcttcttttagggAACGTCTTTACCACTTACagAGAACCGAAAATGAGCGGATTTGCTTTGGGAGGTCAGGTATACACGGATGGGGCCTTTTTGCGCGCAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGGGAACAAGTGAGACGCAGCATTGCAGATCTAAGGGAGGCACGTTACAGATTAGAAGGCAAAGACTGCTACCTATTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTAATCAATCATTCTTGTGCTCCCAATTGCTATGCAAGGATCATGAGCGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACTAACGTACCGGCCGGTGATGAACTAACGTATGACTACTTGTTTGATCCAGATGAGCCTGATGAATTCAAGGTTCCTTGTTTATGTAAAGCTCCAACTTGCAGGAAATTCATGAATTG 3281 0.4109 MIIKRNLKTQMPSLKRCKLGDSVGDDDDTSAARKKRRTNGYYPLNLLGDVAAGIIPVSFHGLLSAGVSEKGFSASWCTEVSCSPGEVESKSKGENSVRAKINRPAEVSRPPLVRTSRGRVQVLPSRFNDSVIENWKKETKTSVRDYSFDEEFECKKEKFSFKTPKSYNQNLKKGRNDEKIGFKSRKYSTLFEEEPREDGRVRYKNFDVRKYSTPRTTLASMREQSVEDEKGRFIDIEEVDLTGRDRFPKKNDKKKDGLYGPEDFYAGDIVWAKAGKREPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYSGNENQRDFAWVKHGMIFPFIDYVDRFQGQTELSYYKSCDFQMAIEEAFLADQGFTEKLIADINTAAGNTGYDETILKSFLEAPGSNQDAGYHFLNQDLFDRKKDMRPCEACGMDLSFKMSKKMKDSAPGGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKLNKNSGQHNGQLVLPNKVTVLCNGVEGIYFPSFHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSIRVKGSMLPLEQWMLQLAEFHANALVSVKPKKPSSKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCTEKNGKQTTKMVSYCAYHRAPNPDTVLIIQTPLGVISAKSLLQNKKKSGSRLISSNRIKPEDTPPVGDTGEEPFSAARCRIFQRTNPSKKRAADEAVAHRVKGHCHHPLDAIRSLNAYRVVEEEEEAQTFSSFRERLYHLQRTENERICFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCAPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDEFKVPCLCKAPTCRKFMN 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02967 1093 CDD PHD_ATX3_4_5_like 657 703 IPR042011 -
Bva06g02967 1093 ProSiteProfiles Zinc finger PHD-type profile. 457 513 IPR019787 -
Bva06g02967 1093 ProSiteProfiles Zinc finger PHD-type profile. 655 706 IPR019787 -
Bva06g02967 1093 Pfam PHD-finger 670 704 - -
Bva06g02967 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 515 IPR013083 -
Bva06g02967 1093 Gene3D - 261 367 - -
Bva06g02967 1093 ProSiteProfiles PWWP domain profile. 266 335 IPR000313 -
Bva06g02967 1093 SMART set_7 951 1074 IPR001214 GO:0005515
Bva06g02967 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 706 IPR013083 -
Bva06g02967 1093 SUPERFAMILY SET domain 940 1093 IPR046341 -
Bva06g02967 1093 SUPERFAMILY FYVE/PHD zinc finger 458 514 IPR011011 -
Bva06g02967 1093 SMART PHD_3 657 704 IPR001965 -
Bva06g02967 1093 SMART PHD_3 459 511 IPR001965 -
Bva06g02967 1093 SMART PHD_3 768 824 IPR001965 -
Bva06g02967 1093 CDD PHD_TCF19_like 460 510 - -
Bva06g02967 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 826 IPR013083 -
Bva06g02967 1093 Pfam PWWP domain 267 360 IPR000313 -
Bva06g02967 1093 CDD SET_SETD1-like 938 1089 - -
Bva06g02967 1093 Pfam PHD-finger 459 512 IPR019787 -
Bva06g02967 1093 Gene3D SET domain 849 1093 IPR046341 -
Bva06g02967 1093 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1093 - -
Bva06g02967 1093 PANTHER PHD FINGER PROTEINS 1 1093 - -
Bva06g02967 1093 ProSiteProfiles SET domain profile. 951 1068 IPR001214 GO:0005515
Bva06g02967 1093 Pfam PHD-zinc-finger like domain 711 823 - -
Bva06g02967 1093 ProSitePatterns Zinc finger PHD-type signature. 658 703 IPR019786 -
Bva06g02967 1093 SUPERFAMILY FYVE/PHD zinc finger 656 720 IPR011011 -
Bva06g02967 1093 ProSiteProfiles Post-SET domain profile. 1077 1093 IPR003616 -
Bva06g02967 1093 ProSiteProfiles Extended PHD (ePHD) domain profile. 709 824 IPR034732 -
Bva06g02967 1093 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1093 IPR025780 -
Bva06g02967 1093 SUPERFAMILY Tudor/PWWP/MBT 259 363 - -
Bva06g02967 1093 CDD ePHD_ATX3_4_5_like 712 823 IPR041955 -
Bva06g02967 1093 Pfam SET domain 962 1067 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02967 Bva-Chr6 18492789 18501634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02967 658 823 C2H2 Transcription Factor Family AT3G14740 33.333 8.85e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva06g02967 zf-HC5HC2H_2 5e-27 CL0390