Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02965 ATGTCGTCGACGCTGCTGGAGGTGACTCGGGCTGCACACGAGGATGTGGAGCGGCTCGAGCGGCTCATAGTGAAGGACCTCCAGAATGAGCCCGCCTCCTACAAGGACCGCTTGTATCAGAGTCACCGTGTTCGGAACATGATTGATACTATTATCTCTACAACTGAAAAACTCGTTGAGATATACGAAGATAAAGACACTGCAAGGAAGGATGAAATTGCTGCACTAGGAGGTCAAACTGCAACCGGAACAAATGTATTTAGTGCCTTTTATGATAGATTGAAAGAGATACGAGAGTATCATAGAAAGCACCCAGCTGCGCGTGTTGTGGATGCTAGTGAGGAGCCTGAAGCAGTACTTAAGGAGGAACCTCTAATTGAATTTAGTGGGGAGGAAGCTTCCGGTCGATACTTCGACTTGCATGAATTGTACCATCAGTTTATCAATTCCAAATTTGGAGAGCCAATTGAGTACTCTGCTTATCTTGATGTTTTCTCACAAACAGATAAAGTTCCGCGCAAAGTGAAAATGACAAGGCAGTACGGGGAGTAtatggagagtcttctagagTATCTAATTTACTTCTTTCAGCGGACTGAACCCTTGCAAGATCTTGATCGTATTTTCTCAAagGTAGTTTCTGAGTTTGAAGAAGATTGGGCAAATGGCAAGGTACCAGGCTGGGAGAACGACATCCAAGAGAATGGACATGTGCCTGCTGAGCATGCTGTAATAGATCTTGATTATTACAGTACAGTTGAAGAACTGATAGAAGTTGGCCCTGAAAAGTTAAAGGAGGCACTGGCCGCATTGGGACTTAAGACTGGCGGTAGTGTTCAGCAACGCGCTGAGCGATTGTTCCTTACAAAGCATACACCTCTTGAGAAATTGGACAAGAAGCATTTTGCAAAGGGGCCGCGGGGTTCAGATAAAAATGGGCCTGCTGCAGGTccacaacaagaagaaaattcaaaagaaattgccTTGATGGAGGCCAAAATGAGAAGACTATGTGATTTGTTGGAAGATGTAATTGCGAAAACAAAAGACAATGTTGTGAAGAAGCAAGCTCTGACGTATGAGGAACTTGAAGCAGAACGTGGGGAGGAAGAGATACAAGAGGACACCGAGAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTGCCAATGGGATGGGATGGAAAGCCGATTCCTTATTGGCTGTATAAGCTACATGGTCTTGGTCAGGAATTCAAATGTGAGATATGTGGCAACTACAGTTATTGGGGTCGCAGAGCTTTTGAACGGCATTTTAAAGAATGGCGCCATCAGCACGGGATGCGCTGCCTTGGTATACCAAATACGAAGAACTTCAATGAAATTACATCGATTGAGGAAGCAAAAGAACTGTGgaagaaaatacaagaaagACAAGGAGTAAACAAGTGGCGCCCAGATctagaagaagaatatgaagACAAAGAAGGCAACATATACAACAAGAAGACTTACGCTGATTTACAACGCCAGGGTTTGATATG 1529 0.4199 MSSTLLEVTRAAHEDVERLERLIVKDLQNEPASYKDRLYQSHRVRNMIDTIISTTEKLVEIYEDKDTARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPAARVVDASEEPEAVLKEEPLIEFSGEEASGRYFDLHELYHQFINSKFGEPIEYSAYLDVFSQTDKVPRKVKMTRQYGEYMESLLEYLIYFFQRTEPLQDLDRIFSKVVSEFEEDWANGKVPGWENDIQENGHVPAEHAVIDLDYYSTVEELIEVGPEKLKEALAALGLKTGGSVQQRAERLFLTKHTPLEKLDKKHFAKGPRGSDKNGPAAGPQQEENSKEIALMEAKMRRLCDLLEDVIAKTKDNVVKKQALTYEELEAERGEEEIQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYADLQRQGLI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02965 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Bva06g02965 509 MobiDBLite consensus disorder prediction 298 323 - -
Bva06g02965 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 509 - -
Bva06g02965 509 Coils Coil 353 380 - -
Bva06g02965 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Bva06g02965 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bva06g02965 509 Pfam Replication stress response SDE2 C-terminal 223 304 - -
Bva06g02965 509 PANTHER BNAA03G01920D PROTEIN 1 509 - -
Bva06g02965 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02965 Bva-Chr6 18476188 18482763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02965 1 509 C2H2 Transcription Factor Family AT5G06160 75.639 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02965 K12827 - pvy:116133286 883.634