Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02950 ATGAGTACTGATACTTTATCTGATCTTTTTGAAGACAAAGACTTTGGTGGAGATGATCTCTTTGCCATTTTGGAGAGTCTAGAAGACTTCACTTATTTTCCTCCCATTGAAGAAGCTGTTGTTAGCTCAAAGGAGGGCGAGGAAACCTCGAGATTGGTGTCTCAGAAATCATCATCTTCCAGTGCTGTCCAAGAATATTCTGAAACTGAGCTTGAAACTGAACCCAAGAACAAGAGACAGAAGCTTACAGCCACAACAACTTCGTCAGAGGAACCCAGCGCAGATGGGCAGCAAAGAATATCTCACATCACCGTGGAGAGAAACAGAAGGAAGCAAATGAACGAGAACTTGTCCGTTTTGAGATCACTTATGCCTTGCTTTTATGTCAAACGAGGGGACCAAGCTTCAATAATTGGAGGCGTGGTTGACTACATCAGTGAGTTGCAGCAAGTTCTACAATCTCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGCGACGTGCTAAGCCCTAGGCTAGTTTCAAGTCCAAGGCCTTTACCGCTAAGTCCTAGAAAACCACCATTGAGCCCTAGACTAAACTTGCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAGGCCCAGGTTACAACAACCTGCAGCTGGTTACCTCTCACCCACCATATCCAACTCTCTCGAACCATCTCCTACATCTTCTGCTTCCTCCATCAATGACAACATCAACGAGCTCGTTGCCAATTCCAAGTCTGCCATCGCCGATGTGGAGGTCAAGTTTTCCGGTCCTCACGTCCTCTTGAAAACCGTATCTCCTCGAATTCCCGGGCAAGCTCTGAAAATCATGTCAACCCTCGAAGATCTAGCACTCGAAATCCTCCATGTGAGCATTAGCACTGCTGATGAAACTATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTGAGTGCTGAGGAACTGGCTCAACAAATCCTGCAAACATTCTGCTA 998 0.4559 MSTDTLSDLFEDKDFGGDDLFAILESLEDFTYFPPIEEAVVSSKEGEETSRLVSQKSSSSSAVQEYSETELETEPKNKRQKLTATTTSSEEPSADGQQRISHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQSLEAKKQRKVYSDVLSPRLVSSPRPLPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQPAAGYLSPTISNSLEPSPTSSASSINDNINELVANSKSAIADVEVKFSGPHVLLKTVSPRIPGQALKIMSTLEDLALEILHVSISTADETMLNSFTIKIGIECQLSAEELAQQILQTFC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02950 332 MobiDBLite consensus disorder prediction 52 68 - -
Bva06g02950 332 MobiDBLite consensus disorder prediction 80 101 - -
Bva06g02950 332 PANTHER - 9 332 - -
Bva06g02950 332 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Bva06g02950 332 SMART finulus 103 154 IPR011598 GO:0046983
Bva06g02950 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Bva06g02950 332 MobiDBLite consensus disorder prediction 173 213 - -
Bva06g02950 332 MobiDBLite consensus disorder prediction 176 208 - -
Bva06g02950 332 CDD bHLH_AtFAMA_like 100 171 - -
Bva06g02950 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Bva06g02950 332 MobiDBLite consensus disorder prediction 41 108 - -
Bva06g02950 332 PANTHER TRANSCRIPTION FACTOR FAMA 9 332 IPR044283 GO:0003700|GO:0010052
Bva06g02950 332 Gene3D - 89 162 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02950 Bva-Chr6 18372915 18375030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02950 10 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.453 8.57e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g02950 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02950 K20558 - rcu:8274388 437.958