Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02945 ATGGAAATTATGGAACAGAGTATCCTATGCAAGTACACTGTTCATCGCAGTGTGACAAAGAAAGTCACAACGCCGGTGGCAGCTAAGAAGGATTCGCAGTTGCAGAATCCGATAGAGCCCAGAGTGGTACGGGTATCCGTAACTGATCCTGATGCCACGGATTCTTCCAGCGATGAAGAGGGAGACTTTTTTGGTCGCCGGAGAGTGAAGCGTTATGTCAACCAAATTGACATTGAAACTAGCTCTAAAACAACTGCCGTTTCCAATGCCCGGAAGAGACCCGCCGGAGAGGTCCAGTCTTGCCGACGGCCATCCAAAGTTTCTTCAACCTCAAAAGGCCGAAAGTTCCGAGGCGTACGACAAAGGCCTTGGGGAAAATGGGCGGCCGAGATTCGTGATCCTACACGTCGTGTACGGCTGTGGTTGGGCACCTACGACACAGCAGAGGAAGCTGCTATGGTTTATGATAATGCTGCCATTAAGCTACGAGGCCCCGATGCTTTAACGAACTTTGTTACTCCACCGCCTCGGGAGGAGAATGAAGTCGAAGTGGGTGCTGCAGCGGAAGCTGAGCTGGAAGTGAAGCCAGAAATGACCGAAGCGGTTAAGTCAGAAGCTTCTGGGTCAGGGTACGATTCGGGCGAAGAGCATCTTCCTCTACCATCTCCTACCTCAGTTCTCCAATTCCGAAGCAATTCCAATGAGGAAATGGAAGTACAAAAGGCAGTGTCAGCGGAAGTGGAAGAACCAGAGTGCAAAGCGAAAGTGTCGGAAGATGCTATGGGCAACGGAGAGTGGGAGTGTCAAGGGGAAACGACGCTGTTCCACGAAAACGGCAACTATTTCTCACTGGATGTGCCTTCACCGTTGCCAGAGTGGGATGATGATGCGTTCAATTTCACCGCACCAGATTTCTCGGAAATCTTTGAACAAGATCCTCCCCTATTGTTCAGTGAAACGACGCCCATTTTACCGGACCAAGATTTCAGTGAAATTTTATCCGACACACACATAGATTTTGAGGTATCCTACTCTCCATCGACCTCGTGCCAAGTGGACGACTTCTTCCAAGACATTTTGTTAGCATCTGATCCTCTCGTCGTTCTCTG 1109 0.4986 MEIMEQSILCKYTVHRSVTKKVTTPVAAKKDSQLQNPIEPRVVRVSVTDPDATDSSSDEEGDFFGRRRVKRYVNQIDIETSSKTTAVSNARKRPAGEVQSCRRPSKVSSTSKGRKFRGVRQRPWGKWAAEIRDPTRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPREENEVEVGAAAEAELEVKPEMTEAVKSEASGSGYDSGEEHLPLPSPTSVLQFRSNSNEEMEVQKAVSAEVEEPECKAKVSEDAMGNGEWECQGETTLFHENGNYFSLDVPSPLPEWDDDAFNFTAPDFSEIFEQDPPLLFSETTPILPDQDFSEILSDTHIDFEVSYSPSTSCQVDDFFQDILLASDPLVVL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02945 369 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 247 - -
Bva06g02945 369 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
Bva06g02945 369 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 CDD AP2 115 171 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 MobiDBLite consensus disorder prediction 83 119 - -
Bva06g02945 369 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Bva06g02945 369 MobiDBLite consensus disorder prediction 203 222 - -
Bva06g02945 369 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 7 247 - -
Bva06g02945 369 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02945 Bva-Chr6 18341741 18343647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02945 10 368 AP2-EREBP Transcription Factor Family AT4G27950 40.054 7.75e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g02945 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02945 - - gmx:100807598 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02945 06 18341741 18343647 Bva06g02945 06 18341741 18343647 ECH