Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02887 ATGGATGACGgtgtaaaagaagaaaacaaaatgaccGGCttctgtttcaaaattttaaaagctgGGATCAGACGGTCTCAAGAACCAAGTCCCCCACCCTCGCTCGCGACTCAGATTTCTGGGGATTTTGGTTCAAAGTGCTTCAACCGCGCCCTCGAAACTAGGGGTTCTTTTTGTGCTGGAAGGATGGAAACTGAAGATGGAGCCAGCACTGCAGATAATACAGAATGTCCTGAAGGGGTTCAGTGCTTGAAAATTGAATCTACGATTAATGGAGCGCAAATTGCAGATGAAAATGCTGTTGCTGAAGGGATTCAGTTGAAAAGTGAAGCTGTAAATAATAGGGTGGCAGTTGCAAGGGAGGATGATGTTACTGAAGGGGTGCAAAGTGACGCTGTAAATAATGGGGTGGCAATTTCAGATGTGAATGATGTTGGTGAAGGGAGTTCTTGTGGAATTCGAACTTACAAGAGGCGTAAGCAAGTAATGTTGATTCCAGAAAGCAATGTTCAAGAAGATTGCAGGGCATATGTGGAAGCTGCAAGTCATCTAGCGGAACAGGCTGTGAAGGAACCATGTAATGTCAATGTAGGCAGTACTTCTTACGGGCAATTTTGTCTTCCTGTCATTGGCTCAAATGAATATTCACATGGACACTGGGGAAATGTCATACTAAGGCATCTTTATCAGTCATTAGGTGATGATATGGGTGGCATTGAGGCATGCATAAGAAAAGCACTTTCATATCAACCTAAAACTAGTTGTGCCACTGCAGTTAAGGAAACTcataaaattgacaaagacAGGCAAGAATGCTCTTCACAATTATCTCACAGATTACAGACTGAAGCTAATGAGAATAAAGATGATATGCCTGATAGATGTTTTACTGAATCCGATGGCCATGGTGTGACTGACATATGTCAACATGTGCTATGTTATGTGTTTGCCtcagaaaaattcaatttgttaTGTAAGGTGCTAAATGAAAGCTTCCCGGGGATGAAGCCTGAAGGTGTATTTGACTTTAGTGTCATAAACTCAAGGATGAAAGGGAAAGTTTACGAACAATCACCCACACTTTTCTTGTCAGACATTCAACAGGTATGGAAAAAACTTCATGATACTGGAAGTGAAATTGTTTCTCTAGCCAAGAGCCTTTCAAACTTGTCAAAAACTTCTTATTGTGAGCAGGCAGGAGTTTCTACACACAGCACACGTGAAGATGAAAAGCTAGAGTTCTGCAACTGGGAATGTGACTCTCACATGAAACCGGAGCAGACAGAAGAGCGtagtatatataaactttGCACTTGCAGTCGTTGTGGAGGCAAGGCAGATGGGACAAACTGTTTAGTTTGTGATTCTTGTGAGCAGATGTATCACATCTCCTGTATTGAGCCTGCCGTGAAAGAGATACCCCACAGAAATTGGTACTGTGCTGATTGCACTGCTAGTGGAATTGGATCTCCACATCAGAATTGCGCTGTGTGTGAAAGGTTGAATGCCCCAAAGACTCTGAAAAACATAGTTGGCCACGAAACCTTCCTTACAAATGAGGTGCTTCGGGAATTGGAAGATAATTCAAATTGTGCGTATGATGGGCTTCAAGGATCCACAGTTGGGAAAGATTTATCTGTCTGCAAAGTCTGTGGGACTGATGTGGATGggcaaaatatgaaaatctgTGGCCACCCCTACTGCCTCAAATACTACCATGTAAGGTGTTTGACAACTATGCAGTTAAATTCATATGGTCCACGGTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGTCTCACTGACCGGGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCTTACCACATCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAAGGGAAATGGTATTGTAGAAAATGTGATGCTGGGATACAGGCTATTCGCCGGGCAAAAAAGGCATACGAGAGTAACGAACAGAGCAAAACAGGTCAAGGCAACATACGGCCATGTGGAAATCTTGGAAAGAAATGGAACAATAAACATGGACGGGAATTAGACAAAGGTGGAGGAATGGAGATGCTTTTAACTGCGGCCAGTACTCTGAATAATGAAGAGAACTTGGCAGCAATCCACATTGGATCACAATG 2147 0.4103 MDDGVKEENKMTGFCFKILKAGIRRSQEPSPPPSLATQISGDFGSKCFNRALETRGSFCAGRMETEDGASTADNTECPEGVQCLKIESTINGAQIADENAVAEGIQLKSEAVNNRVAVAREDDVTEGVQSDAVNNGVAISDVNDVGEGSSCGIRTYKRRKQVMLIPESNVQEDCRAYVEAASHLAEQAVKEPCNVNVGSTSYGQFCLPVIGSNEYSHGHWGNVILRHLYQSLGDDMGGIEACIRKALSYQPKTSCATAVKETHKIDKDRQECSSQLSHRLQTEANENKDDMPDRCFTESDGHGVTDICQHVLCYVFASEKFNLLCKVLNESFPGMKPEGVFDFSVINSRMKGKVYEQSPTLFLSDIQQVWKKLHDTGSEIVSLAKSLSNLSKTSYCEQAGVSTHSTREDEKLEFCNWECDSHMKPEQTEERSIYKLCTCSRCGGKADGTNCLVCDSCEQMYHISCIEPAVKEIPHRNWYCADCTASGIGSPHQNCAVCERLNAPKTLKNIVGHETFLTNEVLRELEDNSNCAYDGLQGSTVGKDLSVCKVCGTDVDGQNMKICGHPYCLKYYHVRCLTTMQLNSYGPRWYCPSCLCRVCLTDRDDDKIVLCDGCDHAYHIYCMKPPRTSIPKGKWYCRKCDAGIQAIRRAKKAYESNEQSKTGQGNIRPCGNLGKKWNNKHGRELDKGGGMEMLLTAASTLNNEENLAAIHIGSQ 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02887 715 SUPERFAMILY FYVE/PHD zinc finger 595 647 IPR011011 -
Bva06g02887 715 Gene3D - 340 486 - -
Bva06g02887 715 ProSiteProfiles Zinc finger PHD-type profile. 436 486 IPR019787 -
Bva06g02887 715 PANTHER HISTONE ACETYLTRANSFERASE 223 705 - -
Bva06g02887 715 SUPERFAMILY FYVE/PHD zinc finger 544 596 IPR011011 -
Bva06g02887 715 SUPERFAMILY FYVE/PHD zinc finger 433 485 IPR011011 -
Bva06g02887 715 ProSitePatterns Zinc finger PHD-type signature. 591 640 IPR019786 -
Bva06g02887 715 ProSiteProfiles Zinc finger PHD-type profile. 593 643 IPR019787 -
Bva06g02887 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 642 IPR013083 -
Bva06g02887 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 599 IPR013083 -
Bva06g02887 715 Pfam PHD-finger 439 485 IPR019787 -
Bva06g02887 715 Pfam PHD-finger 596 641 IPR019787 -
Bva06g02887 715 PANTHER D4, ISOFORM A 223 705 - -
Bva06g02887 715 SMART PHD_3 598 641 IPR001965 -
Bva06g02887 715 SMART PHD_3 547 595 IPR001965 -
Bva06g02887 715 SMART PHD_3 438 484 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02887 Bva-Chr6 18032176 18036975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02887 595 665 C2H2 Transcription Factor Family AT3G01460 45.070 4.57e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva06g02887 PHD 2.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02887 - - gmx:100795906 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02887 06 18032176 18036975 Bva06g02887 06 18032176 18036975 ECH