Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02880 ATGCTGGGATCTTTACAGTCTTGCGAAGGGAATCTGTTGCCTGAAAACACAAAGGAAGATTTATTTCTGCAGAGTGTGTGGCCACATTCCGGGTCACAAGAATGTAGCACTGTTGAAGATTCTCAAAAAGGGGAAGTAGCCAGGATTGAAAGAAgtgtaaaaatttcaagttctcCATCATGTACTTCTagtattaaagataaaaagagcGATTCTGATTGTCTAGATGCAGTTAATTTCCATTGCTTGTTGCAAAGCTTGCCAAATACTGACGAGGATACTAAATCACTACATGGAAGTGCTTTTTCTGACATCAGTGAGATGGATGATGTTAAAAAGCTATCTTATCAGAATGAACTGTCTGTATCAGCTTCAAATGTAGGATATTCAGAGAATAGTCATCATGTAGGGGATGATGTAAACTGCAGATTGTTGACTTCAGTTGACAATGTAATTAACACAGATCCAAATACATGTAATTTTGCCTATGATAAAGTTGATGGCTTGAGTTCTAATGATCTTATGGACAATTTGCCAAAGAACATTGCAGTTTGTGACAGTGGCAATGATGGCATTGTTGATAAGCCATATTGCAAAAATAAGGTGTCTATGATAAGTGctattttagaagaaaatccAGAGACTGCTATTCCTGTACTCACCCCTGGTATAGTTGGTTCTCCTAATCTTGAGGTAAGGAGGAATCAAAATGGTCCAGGATGCCCACAAAGTGCCAGAATACACAAGCAGGGTTCTGATAATGGCTTAACTAATTCAGATGATAATATTACTCTTTCCCATTGCGGTATCATGTATGATTCTGGAAAGCTGGTGTCTCCCAGTCATGACAACATGTCCcaagaaaattttaccaaAGAAATGTtccaaaattctaaaatttctgTTGGATTTGGTGAATTGGGTACTAATAAGATTAACGAGAGAAAAGTTAGGACTCATTTAGATTTTTCAAGTTCAAAACTTGAGAACATATCCAGTGGGCCTAAAAATCCAGTTAGTCTTCCAAATGTTGTGGAAACAACATTGAGTCTGGCTTTGAAGGATCAAATTACTCCTGAAGTTTCAAATTCTGCTGTTCAAAGGTTAAATTTTAGCTTATCTGGCATAGAGGGGGTCACTGTTGTGCATGAGAAAAAGAGGGTTTCAGAGGATAAAGTCGTCATAGGAAATAATTGCAATGACAATCAATATGGGGTTTCACATGTGTCTGAAAGGGAAAAAGTCAGAGCTAGTCAACCCAATTTCTCTCCATGTCAAGCTGAATTCAGTGATGCGATTGTGGTGGCCACATCCTGTGTAAAAGTTCCCATTAGTATATGTGATAACCAAGAACATCATAAGGAAGGAGTTGCACGGTCAAGCATGGCTCTTCTTTCCACTTCTCCTTCAATGCTTTATCCAGAGGATAGCTCGGAATTGCCAGATGATAATTTGGTTGGAGGATCTTTGGATTCCATGAACACCAATGGGGAAATTGCGAGTTCTGAGTGCTTGGAATTGCAGCACCCAGGCATTGGCTCTAAGTTAATTCTTGAGGATTTGGTCATTCAAAATGTTCAATTATCTTTCCCAACGTTAGAAGCTAAGCTGCAAGTAAATGCTACTCCAAATTTACCtacaaatattaatcaaaataacattctggatattgaaaatttgaagggAGAAAAGATGAATATACAGGctggagaagaaaaagttgtTTCTCCCATTAGAGACTTTGTGCAAAGATATCCTAGTGCTGATATGAGATGTAATGATCTTGGTACGAAGGATGATCTACTTCCtgagaaaaaatattcatcCAGTCCTACTGAGGGTGATGGAGTTGCTACTACCAGTAACTCCAATGATGAATTGGTTGAAGCTATACCTGATGTACATTCAGATATGAATTCTCCAGGAACTGCATCTGAAGAACCTGACCCAAAGATTTCAGGTTGTCAAGCAATCCATGATGAAAACAGTTCGGGCAGTGAAGAAAATAAGGATAGCGAGTCTATGGTTGAACATGGTTCTGAGTTACCTGCTTGTACTTCATCATCCACACAGCATATTGTCAAGAATATGAAGTCAGATCATGCAACTGGACCTAGTAACCCAATCATGGGAAAGATGCCACAGTCATTGCAAGTTTCTTCCAAAGTACCAACTCTGGGCCCCAATTTGTCCTCTTTGGAATTAAATGGAGGCAAAAATCAGCCAGGTTTTGTCACTTCTAGGACTTTCCAGAGTCACTCATCTCGCACTTTCTCTGCATCAAAGGCATCCACATCTTCAACCCATATTTCAAATCCACGAACTTGGCATCGTACAGTGAGTAATTCTCCTGCTTCTCAACCTGGAAGCAAATCTTCAGCAGGCACTCTACCCCCCAAAAGGCCAATTTCTGTAAAGAAAGGGAGCATGCAAAATACTTCTTACATTCGAAAAGGTAACAGTCTTCTAAGGAAGCCTACTCCAATTGCTGCTTTACCGCAAGTCTCCCCCATTAATCAGTTGCCTTCTTTGGTCTTGGATGAATCCCAAAAGAGTGATAGAACTGAAAGCAGAGTGGATGTCACAGATCAACCAAATCTCCTAAAAAAAGGAGTGATCAATGCTCCTTTTGAGAGGCAGAGAACACCTACACTGTCCAGTGACACCAAATCACCTAATCATGCTGCCGCTTCATTGGAGGACAATAGAGTCTCCCCACTGACAGAACCTCTTTCCTATGGTTGCTCTGAAAGTACATTGTATTCTGGAAAATTCCCAGAAATCAGTAATATGCGAAATTCTTCTGAGGATATGCCGAAGTGTTCTGGAACTCCTGAAAATCAATCTGTTCGATCTAATGAAGGGGAGATCCagattgaagaaaatgatggaaatgtGTCTCCTttgaatacaaataaaatagtatatgtAAAGcgcaaatcaaatcaattggTGGCAACTTCTAGTTCTTCTGATCTTTCTGTCTCTACTGATGACAAGGCCCAATCAGCCTTCTCTGATAGCTACTACAAGAGGAGCAAAAACCAGTTAGTTAGGACTGCATTTGAAGGTCAAACCAACCAGACAGTTGCATTGCCAACTGTTAAGTCTGATGGGCAAGGGACTTGTGAGGTTCTTTGCAACAGGCGGTTTAGTAAGAAGCGATCACATAAGGTTGCTGGAAGGTCATGCAAACCTTTGAGAGCATCGTTGGTATGGACACTGTGTGGCACAAATTCATTGAAAGATGACAAAGAATCAGCATTTCATCGGAAGGTTTTACCTCACCTGTTTCCATGGAAAAGAGCAACATATTTGAGAAGCTTCATTCGTAATCCTGCCATTAGCTCCAATAGTAGTTCCTCATCTGCAGTCAGCAAGAAATTGCTTCTTTTGAGAAAGAGGGATACTGTTTACACTAAGTCAGCCAATGGATTTTCCCTTTGGAAATCCAAGGTATTAGGTGTTGCTGGATCTAGTTTGAAATGGTCAAAGTCCATTGAAAGGCGCACAAAGAAAGCTAGTGAGGAGGCCACACTTGCAGTTGCTGCTGTAGataggaaaaagagagagcaGAAAGATGCTGCTTCTATTAATTCTGGGGCAAAGAGGGAACGTATATTTCGTATTGGTTCAGTTCGCTACAAAATGGACCCTTCCAGGCGTACACTTCAGAGGATTTCAGATGATGAATCCTTTTCCTCCACTTCTACTAGGCCGGGTTCAGATGGCAAAAGAACCTACATACCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATTGGAAATGGTAATCAGCTCATTAGAGACCCAAAGAAACGAACTCGTAAATTGGCTAATGAAAAAGTCAGATGGAGTTTGCATACTGCTAGACAACGGTTGGCCCGAAAGAAGCAGTACTGCCAGTTTTTCACTAGATTTGGAAAATGTAACAAGGATGGAGGGAGGTGTCCTTATATTCATGACCCCTCAAAGATCGCTGTCTGCACCAAGTTTCTGAATGGTTTATGTTCCACTCCCAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCAGATTGCTCTTATTTTTTGCAAGGTTTATGCACAAACAGAAATTGCCCATATAGACATGTCAACGTGAATCCTAAGGCCTCTATATGTGAACAATTTCTTAGGGGTTACTGTGCCAATGGCAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCTACTTTTGAAGCAACGGGTACCTGTGCTCAGGGACACAAATGCAAGCTTCACCACCCCAAAAAACCAAgcaagggaaagaaaaggaagagatcTGAAGACCGGAACAGTAAAGGGCGCTATTTTGGTTCGATGCCCATTAATGTTTGTGAACCTGGGATGGCAGTGGCTCCTCCAAGGCAATgtcaacaaaataatgattCATCAGGAAGGGAACTTTCTGACTATATCAGCCTGGATGTTATCGATGACGAAGTTGCAGAAAGTATTGGTCAAGCATACAAGCAAGGAAAATTTTGTGACAGTGATCCCATGGATTTACATTTGGATGATATTGATGAACTGATTAAGCCGGTTCGTATAATGAAAGAGGATTTCACAGCACAATCATCTCCACTCCTACAGCCCATAGTTTA 4637 0.3867 MLGSLQSCEGNLLPENTKEDLFLQSVWPHSGSQECSTVEDSQKGEVARIERSVKISSSPSCTSSIKDKKSDSDCLDAVNFHCLLQSLPNTDEDTKSLHGSAFSDISEMDDVKKLSYQNELSVSASNVGYSENSHHVGDDVNCRLLTSVDNVINTDPNTCNFAYDKVDGLSSNDLMDNLPKNIAVCDSGNDGIVDKPYCKNKVSMISAILEENPETAIPVLTPGIVGSPNLEVRRNQNGPGCPQSARIHKQGSDNGLTNSDDNITLSHCGIMYDSGKLVSPSHDNMSQENFTKEMFQNSKISVGFGELGTNKINERKVRTHLDFSSSKLENISSGPKNPVSLPNVVETTLSLALKDQITPEVSNSAVQRLNFSLSGIEGVTVVHEKKRVSEDKVVIGNNCNDNQYGVSHVSEREKVRASQPNFSPCQAEFSDAIVVATSCVKVPISICDNQEHHKEGVARSSMALLSTSPSMLYPEDSSELPDDNLVGGSLDSMNTNGEIASSECLELQHPGIGSKLILEDLVIQNVQLSFPTLEAKLQVNATPNLPTNINQNNILDIENLKGEKMNIQAGEEKVVSPIRDFVQRYPSADMRCNDLGTKDDLLPEKKYSSSPTEGDGVATTSNSNDELVEAIPDVHSDMNSPGTASEEPDPKISGCQAIHDENSSGSEENKDSESMVEHGSELPACTSSSTQHIVKNMKSDHATGPSNPIMGKMPQSLQVSSKVPTLGPNLSSLELNGGKNQPGFVTSRTFQSHSSRTFSASKASTSSTHISNPRTWHRTVSNSPASQPGSKSSAGTLPPKRPISVKKGSMQNTSYIRKGNSLLRKPTPIAALPQVSPINQLPSLVLDESQKSDRTESRVDVTDQPNLLKKGVINAPFERQRTPTLSSDTKSPNHAAASLEDNRVSPLTEPLSYGCSESTLYSGKFPEISNMRNSSEDMPKCSGTPENQSVRSNEGEIQIEENDGNVSPLNTNKIVYVKRKSNQLVATSSSSDLSVSTDDKAQSAFSDSYYKRSKNQLVRTAFEGQTNQTVALPTVKSDGQGTCEVLCNRRFSKKRSHKVAGRSCKPLRASLVWTLCGTNSLKDDKESAFHRKVLPHLFPWKRATYLRSFIRNPAISSNSSSSSAVSKKLLLLRKRDTVYTKSANGFSLWKSKVLGVAGSSLKWSKSIERRTKKASEEATLAVAAVDRKKREQKDAASINSGAKRERIFRIGSVRYKMDPSRRTLQRISDDESFSSTSTRPGSDGKRTYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKKQYCQFFTRFGKCNKDGGRCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASICEQFLRGYCANGNECRKKHSYVCPTFEATGTCAQGHKCKLHHPKKPSKGKKRKRSEDRNSKGRYFGSMPINVCEPGMAVAPPRQCQQNNDSSGRELSDYISLDVIDDEVAESIGQAYKQGKFCDSDPMDLHLDDIDELIKPVRIMKEDFTAQSSPLLQPIV 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02880 1545 Gene3D - 1380 1442 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 1421 1448 - -
Bva06g02880 1545 ProSiteProfiles Zinc finger C3H1-type profile. 1297 1326 IPR000571 GO:0046872
Bva06g02880 1545 MobiDBLite consensus disorder prediction 681 794 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 848 906 - -
Bva06g02880 1545 ProSiteProfiles Zinc finger C3H1-type profile. 1352 1378 IPR000571 GO:0046872
Bva06g02880 1545 MobiDBLite consensus disorder prediction 1219 1246 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 1229 1243 - -
Bva06g02880 1545 Gene3D - 1324 1379 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 236 260 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 879 898 - -
Bva06g02880 1545 ProSiteProfiles Zinc finger C3H1-type profile. 1379 1406 IPR000571 GO:0046872
Bva06g02880 1545 PANTHER CCCH ZINGC FINGER 142 1531 - -
Bva06g02880 1545 SMART c3hfinal6 1326 1350 IPR000571 GO:0046872
Bva06g02880 1545 SMART c3hfinal6 1406 1428 IPR000571 GO:0046872
Bva06g02880 1545 SMART c3hfinal6 1379 1405 IPR000571 GO:0046872
Bva06g02880 1545 SMART c3hfinal6 1352 1377 IPR000571 GO:0046872
Bva06g02880 1545 SMART c3hfinal6 1297 1325 IPR000571 GO:0046872
Bva06g02880 1545 MobiDBLite consensus disorder prediction 663 677 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 1421 1441 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 612 627 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 590 813 - -
Bva06g02880 1545 MobiDBLite consensus disorder prediction 926 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02880 Bva-Chr6 18001473 18010489 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g02880 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02880 - - lang:109337833 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02880 06 18001473 18010489 Bva06g02880 06 18001473 18010489 ECH