Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02875 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACACCAGCAACAGGCAAGTTACCTACTCGAAGAGGAAGAATGGGATCCTAAAGAAGGCAAAGGAAATCACAGTTCTATGTGATGCCCAAGTTTCTCTAATCATCTTCGCTCCCTCTGGGAAGATGCATGAGTACATCAGTCCTTCTACCACGTTGATTGACGTGCTTGATAGATACCACAAAGCATCTGGGAAGAAGCTTTGGGACGCCAAGCATGAGAGCCTCGACAACGAAATTGCCAGGCTCAAGAAAGAGAACGACAGCATGCAAATTGAGCTCagGCATTTGAAGGGGGAGGACATTACCCCTTTGAACTACAAGGATCTGATGACCATAGAGGAAGCCCTAGAAAATGGCCTCACCAGTATCCGACAGAAACAGATGGAAGTATACAGGATGTACAAGAGAAACGACAAGATCTTGGAGGAGGAGAACCGGGAACTCAATTATGTGCTGcaGCAACGGTTGGCTATTGAAGGTATTAGAGACGTGGACAATGGATTTGATGAGAGTGTAAGGGATTTCGTTTCCCAGATGCCATTTGCCTTCCGCATCCAGCCTATGCAGCCAAATCTACAAGACAGGATGTAGTGTATATATAGCTGTTAGTGCTCTTTGGAACTTATggcgatatatatatagagtgtATTGTATGCGTGTTACATCTCAGTGTTTTCACTTTGACTAAGTTGCagtaaaatttgtaatagaATCTATATATGCTAGTCAACTTAATTAGCTCTTGGTtgttttatataactttgtgTTAAACTGCTTGTGGACTTGTTTGTTGCTATATATGTATGATCATATAAAGTTGAATTGGAATTCAATTATGTTATTAGTC 883 0.3975 MGRGKIEIKRIENTSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAPSGKMHEYISPSTTLIDVLDRYHKASGKKLWDAKHESLDNEIARLKKENDSMQIELRHLKGEDITPLNYKDLMTIEEALENGLTSIRQKQMEVYRMYKRNDKILEEENRELNYVLQQRLAIEGIRDVDNGFDESVRDFVSQMPFAFRIQPMQPNLQDRM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02875 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 208 - -
Bva06g02875 208 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g02875 208 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Bva06g02875 208 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bva06g02875 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bva06g02875 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Bva06g02875 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 Coils Coil 77 111 - -
Bva06g02875 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva06g02875 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02875 Bva-Chr6 17972333 17974881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02875 1 143 MADS-box Gene Family AT5G20240 67.133 8.86e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g02875 K-box 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02875 K09264 - gmx:100817554 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02875 06 17972333 17974881 Bva06g02875 06 17972333 17974881 ECH