Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02871 ATGCTGAAGACGAAGGCATTCAAGGGCGCGAATGTGTTCATGTCGCGGAACCTCGTACCGCCGGAAGTCTTCGACGCACTTCACGACGCTCTCAAGGAAAATGGTGCAGAAATCTTTCTTTGCTGTGATCCTTCGCGCAATGGCCCTCATGATTACCACGTCATATCTTCAATTCAACACGAGAAGTTTAAGGATCTTAGAGCCAAGGGTTGTAATTTGATTGGTCCTCAGTGTTTGCTCTCATGTGCAAAAGAACACAGAGCTTTGCCTAAACAAGGTTTCACTTGTTGCCGTGCTATGGATGGTGTCAAAGTACTTGCATCTGGTTTTGAGATGGATGAGAAGGTTAAGATAGGAGAGTTAGTGACAGCGATGGGAGGAGTTCTGCATACTAAAGCATCATTGGATGTCAGTTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGCATATCCTGAAGAAACCAATAGTCACCATTAATTGGTTATATCAATGCTGGACTGAGCATCGTGTTGTTCCTCAAGAGTCATACAGGGTTCCTCCTTTTTCTGGGTTGACAATTTGTGTTACCAAGATTCCAGCAGATGAGCGCATACAGATTGAGAAgcttattttacaaaatggtGGAAAATACTCTGGAGAACTGACAAAGAAGTGCACACATTTGATTTTTCCTGAAGGAGACAAATATAAGGTTGCAAAAAGATGGGGCCACATTCATATTGTGACAAGGAAATGGTTTGATCAATCTGTTGCTCGAAGAGCATGTCTTAATGAGGAGTCATACCCTGTTCAGGATGGATCTGTATTGtcacataaaataacaagGGACAGCTTAAGTACACAATATGGCCAAGAAAAGGACATTAGAAAGTTGCAATCTGCAGCGTCCACTGGGGCTACAGATTCAGATATACCAGTTGTTTCCTGTGCCAAGTTTTCTGATGGAGACCTAGAAGCTACACAGTCGCAGAATATGTCTTCTGCCTTTTCAgttccttctttctttgttaaagAGGGAGATGCCGAAGGACCTCCAGTGCAGTCCTGCAATGAACCCAACCTTGATGGTGCTGTTGCCAATGATTCTGAATCTGACAATAATGACTTGTACTTATCAGAGTGCAGAATACTACTTGTTGGCTTTGAAGCATCTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCAGATACATGGTTTTTAATGATAAGCTGACACACATAGTAATTGGAACTCTCTCTGAAACTGAAAAGAAGGATGTTAGGAGCCTTGCTGCCTTGGGTGTCATTTATGTTGTTAAAACTACTTGGCTTGAAGATTGCGACcgtgaaaagaaagaagtccCTGTTCTAAAAAGACATGTCGCTAATGATTTACTTCTTCCAAAAGATACAGCAGGCTTTGCAAAAGGAGCAATAACAAGCGTTTTAAGCATAAATCAAGGTAAAAGCACCACCATTCATCAAAACTTGCAGACTAATCAGGTGATGGGCACTATCGAGCCTGGAGTTGTAATGTCATCATCTTTGGAGAAAAACAAGGAGATGAAAATGGACATTGGTGTAAATGATCACCTCTCTCTTAAAGCAACAGGCAGATCTACACAGAAAGATCAACATCCTGTTAGTAATAAAATGAAGGGTCAACAGATGGTGCAACTTGACTTAAGTGTTCAAAATGTGAGGTCATCAACCGTTTTCAGagggaaaatattttgtttttcaaattcatttcCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGATGTAGTAAATGGCTACACAAAACAGAATGTCCATTATATTGTTGAGTGTCATGGTGTAACACCTAAGTGTACAGATGCTCAACGAAGTACATGTGTTTCCAGTCACTGGATACGATCTTGTTTAGAGGATGGGTCCTTGCATGATGTTGCTAGTCATATTCTTTATTCTCCACTTCCCTGCCAAGTTCCCTTTCCTGGGTTTGAAAGCTTCAGATTTTGTGTTTCACAATATGAGGAGAAAGACAGGATTCTACTTCGGAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTAGAGAAGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTCAGCAATGGGCCCAAGTACGAGGCTGCTTGTAAGTGGGGGATTCAATCAGTTACATCAGAGTGGATTTTTGAATGTGTCAAACAGAATGGAATTGTTGCGGTTGATCCATTTTTACCTAAAGAAGTCACTGCTCAAGACCAGGAGGCAGGACTTTGCACTGTGAGTCAATTTCCTACCCAAGCCGTTCGAATGATAAGTGCAGACAGTTCCTCCCAGTTTCCCAGTCAGTCACAGAATTTGACAAACACTGCAAATCATAGTGTAGGTAGTGGAGTTGACAATTATGGGgataatactaaaatatcaaGTGTTTACAGAAAAAAAGCAAGGCTTTTGGAAGAGCCTGTCCTATATGATAAGGTGTCTTCCAAAGTAGATCCAAATTTCCCAATCAATGACAGGAACTCTACAGGAGACCATATGCTTGAAGATAAAAGGGAGGTTTCTTATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACCTGCTAGAGCATACTAGAAAGATGAATGATCAGAAGTCACCAGGGAGGACAGGGTGTAAGGAAAGTATTTTCTCATCTGATTGTTCTGTCCTCGGCGAAGATCATTCAAATCCTCATACTGTCATTGGATTATCTAAGCACTGGTTAAACAGAAGCAGCAGAAAAGACGATAGTGATGAGCCTTCTAAAGATCGAAGTGCAGGCATTTATGATGGTTTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTACGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGACAGAGTCCGAACTCGGGGCAGTCTGACTTA 2951 0.4005 MLKTKAFKGANVFMSRNLVPPEVFDALHDALKENGAEIFLCCDPSRNGPHDYHVISSIQHEKFKDLRAKGCNLIGPQCLLSCAKEHRALPKQGFTCCRAMDGVKVLASGFEMDEKVKIGELVTAMGGVLHTKASLDVSFVIVKNVLAAKYKWALHILKKPIVTINWLYQCWTEHRVVPQESYRVPPFSGLTICVTKIPADERIQIEKLILQNGGKYSGELTKKCTHLIFPEGDKYKVAKRWGHIHIVTRKWFDQSVARRACLNEESYPVQDGSVLSHKITRDSLSTQYGQEKDIRKLQSAASTGATDSDIPVVSCAKFSDGDLEATQSQNMSSAFSVPSFFVKEGDAEGPPVQSCNEPNLDGAVANDSESDNNDLYLSECRILLVGFEASEMRKLVNMVRKGGGSRYMVFNDKLTHIVIGTLSETEKKDVRSLAALGVIYVVKTTWLEDCDREKKEVPVLKRHVANDLLLPKDTAGFAKGAITSVLSINQGKSTTIHQNLQTNQVMGTIEPGVVMSSSLEKNKEMKMDIGVNDHLSLKATGRSTQKDQHPVSNKMKGQQMVQLDLSVQNVRSSTVFRGKIFCFSNSFPEERRAEIVQWISQGGGDVVNGYTKQNVHYIVECHGVTPKCTDAQRSTCVSSHWIRSCLEDGSLHDVASHILYSPLPCQVPFPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFSNGPKYEAACKWGIQSVTSEWIFECVKQNGIVAVDPFLPKEVTAQDQEAGLCTVSQFPTQAVRMISADSSSQFPSQSQNLTNTANHSVGSGVDNYGDNTKISSVYRKKARLLEEPVLYDKVSSKVDPNFPINDRNSTGDHMLEDKREVSYAVPDVAAAIEDLLEHTRKMNDQKSPGRTGCKESIFSSDCSVLGEDHSNPHTVIGLSKHWLNRSSRKDDSDEPSKDRSAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRGSLT 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02871 983 ProSiteProfiles BRCT domain profile. 571 659 IPR001357 -
Bva06g02871 983 CDD BRCT_TopBP1_rpt2_like 185 259 - -
Bva06g02871 983 SUPERFAMILY BRCT domain 573 661 IPR036420 -
Bva06g02871 983 Gene3D BRCT domain 32 94 IPR036420 -
Bva06g02871 983 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 6 971 - -
Bva06g02871 983 SMART BRCT_7 374 454 IPR001357 -
Bva06g02871 983 SMART BRCT_7 97 174 IPR001357 -
Bva06g02871 983 SMART BRCT_7 669 745 IPR001357 -
Bva06g02871 983 SMART BRCT_7 184 259 IPR001357 -
Bva06g02871 983 SMART BRCT_7 573 649 IPR001357 -
Bva06g02871 983 CDD BRCT 103 170 - -
Bva06g02871 983 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Bva06g02871 983 MobiDBLite consensus disorder prediction 788 807 - -
Bva06g02871 983 MobiDBLite consensus disorder prediction 927 963 - -
Bva06g02871 983 Gene3D BRCT domain 361 461 IPR036420 -
Bva06g02871 983 Gene3D BRCT domain 671 772 IPR036420 -
Bva06g02871 983 Gene3D BRCT domain 97 185 IPR036420 -
Bva06g02871 983 SUPERFAMILY BRCT domain 668 756 IPR036420 -
Bva06g02871 983 CDD BRCT_TopBP1_rpt2_like 670 745 - -
Bva06g02871 983 SUPERFAMILY BRCT domain 374 458 IPR036420 -
Bva06g02871 983 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Bva06g02871 983 ProSiteProfiles BRCT domain profile. 672 755 IPR001357 -
Bva06g02871 983 Gene3D BRCT domain 186 270 IPR036420 -
Bva06g02871 983 MobiDBLite consensus disorder prediction 927 943 - -
Bva06g02871 983 Gene3D BRCT domain 568 665 IPR036420 -
Bva06g02871 983 Pfam BRCA1 C Terminus (BRCT) domain 572 646 IPR001357 -
Bva06g02871 983 ProSiteProfiles BRCT domain profile. 182 269 IPR001357 -
Bva06g02871 983 SUPERFAMILY BRCT domain 58 185 IPR036420 -
Bva06g02871 983 SUPERFAMILY BRCT domain 185 270 IPR036420 -
Bva06g02871 983 Pfam twin BRCT domain 104 166 IPR001357 -
Bva06g02871 983 Pfam twin BRCT domain 676 737 IPR001357 -
Bva06g02871 983 Pfam twin BRCT domain 190 251 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02871 1 983 Core DNA Replication Machinery Family AT1G77320 54.183 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02871 K10728 - qsu:111999234 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02871 06 17950852 17958625 Bva06g02871 06 17950852 17958625 ECH