Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02830 ATGGCTGTCATCACTACCGATTCCCCTATCTCTCGTCGCATAGTTCGTGCCTTCTTGAACTTCCTCGATTCCGTTGAACCGGTTCCTGGTGTTGATCTTGAGGGTCTCGAGGTATCTAAGGAGTGTTTGACAGAGATCTTCAAGCTTGATAAATATCCAGTAGATGATGATGCAAGATGTGATTCATTAGTCAACATATTCAAGTCCCTTGAAGCAAACAAGCAATCTGAAACTACTAAGTCGGTTATTGGTGTTCAAGCAAATTCAGTGGATGCTTCCAGTTCTTTATCTGCTCAGAATGCTGCTCATACTAAAGATCATTTAGGGTCATCAAAATCTCTGGACAAGGATTGGACGCAGGGCACCCAGACCTTTGCAGGAGTATCTAAAGATGAACTTTGCGGGCAATTCTTTGCTGCTCTGGAGAAAAATCACTTCTTTAGGACCAGAACTGATGGGAGTGATGATCCCGTGCAACTGGAGAAAGCATCGCAAATATTTGTAGAGGGTATAATGGAATTGGAAAGATCTGGATGTCGGGAGTTTAATCTGAGGAACTTGGCTGAATCACTGAAATCACATGGTAATAAAGCAATGCAAGCCAAGAAATACACTGATGCAATTGAGTTGTATGACTGTGCAATTGCGCTATGTGATAATAATGCTGTTTACCATTGCAACAGGGCCGCTGCTTACACTCAAATCCACAAATATAATGAAGCAATCCAAGATTGTCTTAGATCTATTGAGATTGACCAAAATTATAGCAAAGCATACAGTCGTCTGGGCCTAGCTTATTATGCACAGGGAAACTACAGAGATGCTATTGATCAAGGGTTTAAAAAAGCGTTGCAGTTAGATCCAAATAATGAGTCTGTTAAAGAAAATATCCGGGTGGCTGAACAAAAATTGTCAGAACAGCAACAACGTGCAGATAATGGTCAGTTTCCAAGATGGTTTCAAGAGTTCCAGAACCGCACTGCACAAGGGTCAGCAAACCATGAAGCACCACCTACGTTTGGCTCAATGCCTTTTAATGCCAGCGATATGGCAAGCATGTTCATGAACATGGCTACAAACGCATCCCATGGGCATGGTCCTCAAGAAAGGCAAGGAGAAGATCGCAGCAATAATAGCAGTGAAACTAACGAACCCGAAATAAGAATTGGTCATAATGTTAGCATAAACCTTGGAGAAATACCTGTGCCAATGCCTGAGGAGCTATCTGGAGCACTTAGATCTGTGATGGAAATGTTATCGGGGGCAGCACCACAGGGGCAACAACAAAATCACATGAACGGAGGAAATTCACCAAACTG 1319 0.4261 MAVITTDSPISRRIVRAFLNFLDSVEPVPGVDLEGLEVSKECLTEIFKLDKYPVDDDARCDSLVNIFKSLEANKQSETTKSVIGVQANSVDASSSLSAQNAAHTKDHLGSSKSLDKDWTQGTQTFAGVSKDELCGQFFAALEKNHFFRTRTDGSDDPVQLEKASQIFVEGIMELERSGCREFNLRNLAESLKSHGNKAMQAKKYTDAIELYDCAIALCDNNAVYHCNRAAAYTQIHKYNEAIQDCLRSIEIDQNYSKAYSRLGLAYYAQGNYRDAIDQGFKKALQLDPNNESVKENIRVAEQKLSEQQQRADNGQFPRWFQEFQNRTAQGSANHEAPPTFGSMPFNASDMASMFMNMATNASHGHGPQERQGEDRSNNSSETNEPEIRIGHNVSINLGEIPVPMPEELSGALRSVMEMLSGAAPQGQQQNHMNGGNSPN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02830 439 MobiDBLite consensus disorder prediction 421 439 - -
Bva06g02830 439 MobiDBLite consensus disorder prediction 367 381 - -
Bva06g02830 439 MobiDBLite consensus disorder prediction 96 115 - -
Bva06g02830 439 SMART tpr_5 222 255 IPR019734 GO:0005515
Bva06g02830 439 SMART tpr_5 256 290 IPR019734 GO:0005515
Bva06g02830 439 SMART tpr_5 188 221 IPR019734 GO:0005515
Bva06g02830 439 ProSiteProfiles TPR repeat profile. 256 290 IPR019734 GO:0005515
Bva06g02830 439 SUPERFAMILY TPR-like 187 301 IPR011990 GO:0005515
Bva06g02830 439 Coils Coil 290 310 - -
Bva06g02830 439 PANTHER LD24721P 7 434 - -
Bva06g02830 439 MobiDBLite consensus disorder prediction 359 392 - -
Bva06g02830 439 PANTHER LD24721P 7 434 - -
Bva06g02830 439 Pfam Tetratricopeptide repeat 223 255 IPR001440 GO:0005515
Bva06g02830 439 Pfam Tetratricopeptide repeat 257 290 IPR001440 GO:0005515
Bva06g02830 439 Gene3D Tetratricopeptide repeat domain 184 343 IPR011990 GO:0005515
Bva06g02830 439 MobiDBLite consensus disorder prediction 417 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02830 Bva-Chr6 17747116 17752473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02830 187 286 U-box Gene Family AT3G07370 31.000 8.26e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02830 K16365 - gmx:100799770 543.888