Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02812 ATGTCTTTGAGCCCTCCTCGATTGAGGACTAATGGGTGGCCCTACTGGTGCTTCCGGTGTAATAGAATGGTCAGGGTCGCCTCCACAGACCCTTCTCAGATTCTCTGCCCTCGTTGCTTTGGGGGATTCCTCTGTGAATTGAACATATCATGGCCTAGACTCGTTTTCAGTGTCACTAATCACGATCCTTCCCCAGAAGCACGTTTGCTCGAAGCGCTTTCTCTGATGCTTGACCCACAAATAAGTATCTCTAACAGACGTCACCATGAGGAAGCTCAACCTCCAAGGCACTTACCTTGGATGCAGAGACAACCTGACAATCGTGAACAAGAAGACAGACATCATTCAGAACTGAGGCTGCGTGAAGAAATTCCTGGCCATCATGTAAGACGTCCGCGATATCATCATGGCTTTGGTCAGGATAATGGAATTGATACCAGAACTGGAACATGGACAATTCTTCCACGAATGAATCATTCTACTCCATTTGAGCTAATTCCTCGACCTCGACGAGAAAATCCTATCCCACGTGGGGCTAATACAAGGGATAACTTTTTGGGGCCGGGTCTGAACGAATTGATTGAGCAATTAACTGAGAATGACCGGCAAGGTCCGCCGCCAGTGCCGGATAGAGCAATCAATGCGATTCCTACAGTGAAAGTCTCGGAGAACCATTTGAAGGAGAACTCTCATTGCGCGGTTTGCCAAGAGGAGTTTGAAGTAGGTGGGAGAGCAAGGGAGTTACCCTGCAAACATATATACCATTCAGATTGTATTGTTCCATGGCTAAGGCTTCACAATTCCTGCCCTATTTGCCGGCATCAAGTGCCGGTGTCTTCTGACTCCAATGAATCTCAGCAAGGTGGAGGAGGCAGGTTGCGCAGGCGGGGGCAATCGACTTCAATGTTACCTTCTCGCGAAAGGTCTCGACGGGTTAATCCAGAGACGTA 950 0.4863 MSLSPPRLRTNGWPYWCFRCNRMVRVASTDPSQILCPRCFGGFLCELNISWPRLVFSVTNHDPSPEARLLEALSLMLDPQISISNRRHHEEAQPPRHLPWMQRQPDNREQEDRHHSELRLREEIPGHHVRRPRYHHGFGQDNGIDTRTGTWTILPRMNHSTPFELIPRPRRENPIPRGANTRDNFLGPGLNELIEQLTENDRQGPPPVPDRAINAIPTVKVSENHLKENSHCAVCQEEFEVGGRARELPCKHIYHSDCIVPWLRLHNSCPICRHQVPVSSDSNESQQGGGGRLRRRGQSTSMLPSRERSRRVNPET 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02812 316 Pfam Ring finger domain 231 273 IPR001841 -
Bva06g02812 316 ProSiteProfiles Zinc finger RING-type profile. 232 273 IPR001841 -
Bva06g02812 316 SUPERFAMILY RING/U-box 212 279 - -
Bva06g02812 316 SMART ring_2 232 272 IPR001841 -
Bva06g02812 316 MobiDBLite consensus disorder prediction 275 307 - -
Bva06g02812 316 MobiDBLite consensus disorder prediction 162 187 - -
Bva06g02812 316 MobiDBLite consensus disorder prediction 275 316 - -
Bva06g02812 316 CDD RING-H2_RNF126_like 232 273 - -
Bva06g02812 316 MobiDBLite consensus disorder prediction 87 120 - -
Bva06g02812 316 Pfam zinc-ribbon 15 47 IPR039525 GO:0061630
Bva06g02812 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 279 IPR013083 -
Bva06g02812 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 59 - -
Bva06g02812 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 172 299 - -
Bva06g02812 316 PANTHER - 14 59 - -
Bva06g02812 316 PANTHER - 172 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02812 Bva-Chr6 17639300 17640510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02812 176 306 C3H Transcription Factor Family AT1G68180 36.496 2.99e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02812 K11982 - twl:120009727 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02812 06 17639300 17640510 Bva06g02812 06 17639300 17640510 ECH