Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02809 ATGACCAGCGTAGTGATTAGCTCAGCTATGGCCATGGCCGTGGATGGCATCCCTGAGCTTGATTTTTCCGGTTAcagcaccaccaccaccccTACTTCCGACGATGACCACGGCTGTAACTGGAATCATTGGTCCCCGGTGGTCAACTGGGACTTCATCACCGGTGGCCAAGATGACTTCCACGATCTCATCGAATCCATGATGGACGACGCAGTTGTGCTGAACCCAGATAATAGCAGTGGCGTTGAAGAAGAAGGGTCCAATTCTGCTTCCACCACCACGGAGGTGACCATGGTGGATGTTGAAGAAACCAACGGTGATGATTTTAAAGGTCTTAGGCTGGTCCACCTTCTGATGGCGGCCGCCGAGGCCCTCACCAGCGTTAACAAGAGCCGTGATCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTGTCTCCCACCGACGGCACCAATATGGAAAGGTTGGCGGCGTATTTTACCGACGCCTTGCAAGGTTTGCTAGAAGGCGCGGCAGGGGGTGGAGTCGCTGCGCACAATAAGCATTTTCTAAGCAACGGACCCCACCATCGCGACgaacatcatcatcatcaaagtGACATGCTGGCAGCGTTCCAGTTGCTCCAGGACATGTCCCCTTACGTGAAATTCGGCCACTTCACGGCAAATCAAGCAATCTTAGAGGCCGTGGCCCACGATAGGCGGGTCCACATTGTGGATTACGACATAATGGAAGGGATCCAATGGGCCTCGTTGATGGAGGCCCTCGCCACTAGGAAGGATGGCCCACCGGCCCCACATCTTAGAATCACTGCATTGTCAAGAGTTGGAAGCGGGAGCGGCCGCAGATCAATCGCCACCGTCCAAGAAACCGGTCGACGATTGACGGCGTTTGCGGCCTCCATTGGTCAGCCCTTCTCGTTTCATCAATGCAGGTTTGACTCGGACGAAACGTTTCGACCGTCATCTCTGAAGTTAGTTCGAGGTGAGGCCTTGGTGTTCAACTGTATGTTAAATCTGCCGCACCTTAGTCATCGTAACCCCGATTCGGTTGCGTCCTTTCTTAGCGGGGCTAATACGTTGAACCCGAGACTTGTCACCCTGGTTGAAGAGGAAGCGGGGCCCATTGGGGATGTTGGATTCGTAGGGCGGTTTATGGACACGTTGCACCATTATTCGGCGGTGTGTGATTCTTTGGAGACCGGGTTTCCGATGCAAAATCGATCCCGGGCATTGGTGGAGCGGGTGTTTTTGGGACCCCGAATAGCGGCGTCGTTAGCCCGGATATACAGAACGGGCGGGAAAGAGGAGAGAGGGACGTGGGGGGAGTGGTTGAGTGGAAAGGAGTTTAAGGGAGTTCCGATAAGCTTTGCAAATCATTGCCAGGCAAAACTGTTATTGGGTTTATTCGACGATGGGTATAGGGTGGAGGAGCTGGGTAGCAATAAGTTGGTGTTGGGATGGAAATCTAGGCGTTTGTTTTCGGCTTCTGTTTggtcatcttcatcttcttcttcagacACATA 1529 0.5108 MTSVVISSAMAMAVDGIPELDFSGYSTTTTPTSDDDHGCNWNHWSPVVNWDFITGGQDDFHDLIESMMDDAVVLNPDNSSGVEEEGSNSASTTTEVTMVDVEETNGDDFKGLRLVHLLMAAAEALTSVNKSRDLARVILVRLKELVSPTDGTNMERLAAYFTDALQGLLEGAAGGGVAAHNKHFLSNGPHHRDEHHHHQSDMLAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMEALATRKDGPPAPHLRITALSRVGSGSGRRSIATVQETGRRLTAFAASIGQPFSFHQCRFDSDETFRPSSLKLVRGEALVFNCMLNLPHLSHRNPDSVASFLSGANTLNPRLVTLVEEEAGPIGDVGFVGRFMDTLHHYSAVCDSLETGFPMQNRSRALVERVFLGPRIAASLARIYRTGGKEERGTWGEWLSGKEFKGVPISFANHCQAKLLLGLFDDGYRVEELGSNKLVLGWKSRRLFSASVWSSSSSSSDT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02809 509 PANTHER SCARECROW-LIKE PROTEIN 26 21 502 IPR030028 -
Bva06g02809 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 502 IPR005202 -
Bva06g02809 509 Pfam GRAS domain family 114 500 IPR005202 -
Bva06g02809 509 ProSiteProfiles GRAS family profile. 105 501 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02809 Bva-Chr6 17623088 17624617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02809 102 502 GRAS Transcription Factor Family AT5G41920 34.236 3.16e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva06g02809 GRAS 2.4e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02809 - - cit:102620887 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02809 06 17623088 17624617 Bva06g02809 06 17623088 17624617 ECH