Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02801 ATGACAGACTCCCAGAGATCTATAGGCACCGTAAAATGGTTTAATGCACAGAAGGGTTTCGGATTCATTGCTGCAGATGACGGTGGTGACGATCTTTTTGTTCATCAGAGTTCGATCCGATCCGATGGGTATCGGACCTTATTCGAGGGTCAGCAAGTGGAGTTCATTGTGGATTATGACGAGGGTGGACGAACCAAAGCTGTTGATGTGACAGCTCTTGTTAGATCTCGCCGTTTTGGCGGTGTTCGTGGTGGTGGCAGGGGGAGAGGAAATTATGATAGAAGGGGCGGAGGGGTTGGGTATGGCCATGGCGGAAGCTACGGCGGTAATGATGGTTATGGGTATGGTAGAGGTGGAGTGATTGAGAGGAGAGGTGGTACATACGGTGGTGGAGGTGGCAGATTTGGTGATGGCGGCGGCCTTGAATGTTATAATTGTGGACGAATAGGTCATTTGGCGAGAGATTGTTATCAGAGTAGTAGTGGTGGGACTCGGAGACGCGGTGGTGGCACTGGCAGAGGCGGAGGAGCGTCAAGAGGGTGTTACAATTGTGGGGAGGAAGGGCATTTTGCCAGGGAATGCCCTAATGTTGAGAAATG 599 0.5125 MTDSQRSIGTVKWFNAQKGFGFIAADDGGDDLFVHQSSIRSDGYRTLFEGQQVEFIVDYDEGGRTKAVDVTALVRSRRFGGVRGGGRGRGNYDRRGGGVGYGHGGSYGGNDGYGYGRGGVIERRGGTYGGGGGRFGDGGGLECYNCGRIGHLARDCYQSSSGGTRRRGGGTGRGGGASRGCYNCGEEGHFARECPNVEK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02801 199 Pfam Zinc knuckle 142 156 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 Pfam Zinc knuckle 179 196 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Bva06g02801 199 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Bva06g02801 199 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Bva06g02801 199 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Bva06g02801 199 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Bva06g02801 199 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Bva06g02801 199 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Bva06g02801 199 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Bva06g02801 199 ProSiteProfiles Zinc finger CCHC-type profile. 143 156 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 Gene3D - 139 168 - -
Bva06g02801 199 Gene3D - 172 199 - -
Bva06g02801 199 SUPERFAMILY Retrovirus zinc finger-like domains 133 196 IPR036875 GO:0003676|GO:0008270
Bva06g02801 199 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 196 IPR001878 GO:0003676|GO:0008270
Bva06g02801 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 197 - -
Bva06g02801 199 Gene3D - 1 71 IPR012340 -
Bva06g02801 199 SMART csp_8 8 73 IPR011129 GO:0003676
Bva06g02801 199 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02801 Bva-Chr6 17585781 17587378 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bva06g02801 CSD 3.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02801 - - zju:107421013 163.31