Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02775 ATGCCTCCGAGACAGCCACGGCAACGACAACATCCGGCGCCGCAGCTGATTCGCCGTCTCGACCCCAAAATCTGGCGGGCATGTGCTGGCGCCTCCGTTCAAATCCCCGTTCTGCATTCTAGGGTTTACTACTTCCCTCAAGGCCATCTGGAGCAAGCCTCGTCAACTCCTCAATACTTGTCTTCTCGTGTCCTCTCTTGCCTATTCGTTCACTGTCGCATCTCCGCTGTAGAGTTCCTAGCTCATCCTGACACCGATGAGGTATTTGTTAAGCTTCTCCTGCAACCTATTGGGGAAGTCCGCCCTCAAGACATTGGCGATTCGGTGGAATCACCGGACGATGACAAGGTCGTGTCATTTGTTAAGGTTCTCACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCGGTTCCGAGGTTCTGTGCTGATTCTATCTTACCGCCGCTCAACTACCAGTCTGACCAGCCGGCTCAGACATTGTCAATCACTGACGTTCACGGAGTCTCTTGGGAGTTTCGCCACGTTTACAGGGGTACGCCTAAGCGACACTTGCTCACTACTGGCTGGAGTAAGTTTGTCGACAAAAAGAAGTTGATTGCGGGTGATTCCGTGGTTTTCATGAAGGACTCCCGGGGGGAGTTGTTCGTAGGGATTCGCAGAGCTGTTCGATTTACTGCAGGAAATGTTGGTGATTGTGCTAGATGGTGTTCCCCGGGAACTAAGGTTGAGGAGGAGATGCAGAAGGAGAACTGCGCTAGTCTAAGCGGGGGAGAAGGGTTTTCCAGGGCCGGGAGAGGGAAATTGTCCGCAAAGTCAGTTGCAGAGGCAGCAGAATTGGCAGCGCAAAATATGCCGTTTGAGGTTGTGTATTTTCCAAGGGCAGGGTGGTCGGACTTTGTGGTGAAGGCGGAGGTTGTGGAGGAAGCAGTTAATATCGTATGGGCTCCGGGAATGAGAGTCAAAATGGCTATGGAGACGGACGATGCGTCCAGGATGACCTGGTTTCAGGGGACTATCTCTTCGGCATGTGCTCCTGATAACGGGCTTTGGCGTGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTCTTGCAGAATGCGAAGCGAGTCAGCCCTTGGCAGGTCGAACATGTTTGCCCCACACCTACACTTCATACACCATTTccccccacaaaaaaatttagagctTCTGATGGTTCTGGGGTGCCGGTTGATCGAGAAGGAGACCACATCTTTCCAATGACAGAATTCACTAACTCAGCAATGGCTTACTTGAATCAGCCATTGTTGAATTACAACACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTTTCTTCTGTATCTAGTTTTCGTAACTTTCTGAGTGACAACACTCATTCGTGTAATGGTAATTCCTTTGGGAACTACACAGTACCAAAGTTGAAAACCTTGCCCACTGAGCTCATCGGCAGTTCTCAGTCTGACTTGTCACTCGATAGCCAGAGTAGTTTGCATTCCATTAGCACAGAATTTGTTGGGATACAGAGCGGCAACTCAACAAAACCTTTCGCTGGTTCATTTAAGCTGTTTGGTAAGATCATTCAGACGGAACAGCCTGTTGAAAGTAGTTTGCAGAGTGCTGGTTGCACAGGAGGTAGTGGCTGTAAATGCTGCAAGGCTAAAGCCGTTGAAAACCCACTGGTCATCACTCAAGATTGCTCAACAGGCTTCCTCAGCAGTTG 1739 0.4968 MPPRQPRQRQHPAPQLIRRLDPKIWRACAGASVQIPVLHSRVYYFPQGHLEQASSTPQYLSSRVLSCLFVHCRISAVEFLAHPDTDEVFVKLLLQPIGEVRPQDIGDSVESPDDDKVVSFVKVLTPSDANNGGGFSVPRFCADSILPPLNYQSDQPAQTLSITDVHGVSWEFRHVYRGTPKRHLLTTGWSKFVDKKKLIAGDSVVFMKDSRGELFVGIRRAVRFTAGNVGDCARWCSPGTKVEEEMQKENCASLSGGEGFSRAGRGKLSAKSVAEAAELAAQNMPFEVVYFPRAGWSDFVVKAEVVEEAVNIVWAPGMRVKMAMETDDASRMTWFQGTISSACAPDNGLWRGSPWRMLQVTWDEPEVLQNAKRVSPWQVEHVCPTPTLHTPFPPTKKFRASDGSGVPVDREGDHIFPMTEFTNSAMAYLNQPLLNYNTFPAGMQGARHDLSSVSSFRNFLSDNTHSCNGNSFGNYTVPKLKTLPTELIGSSQSDLSLDSQSSLHSISTEFVGIQSGNSTKPFAGSFKLFGKIIQTEQPVESSLQSAGCTGGSGCKCCKAKAVENPLVITQDCSTGFLSS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02775 579 CDD B3_DNA 119 220 IPR003340 GO:0003677
Bva06g02775 579 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Bva06g02775 579 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Bva06g02775 579 SMART B3_2 120 222 IPR003340 GO:0003677
Bva06g02775 579 SUPERFAMILY DNA-binding pseudobarrel domain 115 220 IPR015300 -
Bva06g02775 579 Gene3D - 314 384 - -
Bva06g02775 579 Gene3D - 117 222 IPR015300 -
Bva06g02775 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva06g02775 579 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva06g02775 579 PANTHER AUXIN RESPONSE FACTOR 15 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02775 Bva-Chr6 17429530 17433218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02775 18 555 B3 DNA Binding Superfamily AT1G77850 48.182 5.23e-165 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva06g02775 B3 8.7e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02775 - - qsu:112025063 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02155 12 16684792 16690624 Bva06g02775 06 17429530 17433218 BWGD
Bva06g02775 06 17429530 17433218 Bva06g02775 06 17429530 17433218 ECH