Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02756 atGGGTCGTGTTAAACTGGAAATAAAGAGAATAGAAAACACCACAAATCGGCAAGTTACATTCTCAAAGCGTAGAAATGGTCTCATTAAGAAAGCCTACGAACTATCTATCCTCTGTGATATTGACATTGCCCTTATCATGTTCTCTCCGTCAGGCCGTCTTAGTCACTTTTCCGGCAGAAGAAGgATCGAGGATGTTTTTACGCGTTACATTGATCTTCCAGACCAAGAAATAGATAATTCTGTACAGTATCCCCACGAACAACATCACAGTCATCGGAGGTACTCTCTCAAGGGTATTCAGAACAAGGAGTATTTGCGTAGGACCCTGCAACAGCTGAGGAGTGAAAATGATATCGCTCTTCAACTTGCCAATCCGGGAGACATCAACTCAGAGATTGAGGAACTGCAACAGGAAGTTAGCAGGTTACACCAACAGCTTCAGATGACCGAGGAACAGCTAAGgtTATATGAACCCGACCCATTGAAGATGACATCTATGGGAGAGCTTGAATCATGTGAAAAGCATCTTGTAGATACCTTGAATCATGTCATGCAGAGAAagGAATACCTGTTGAGCAATCATCTATCTTCGTTTGATCCGTCTGGCATGCAGGGGATGCCTACCTCTTTCCAGAATGTAGGTTGGTTGTCAGATGGTGGCCAGAATCATCCCCAAATTTTTGATGCGTCTACTCCGTTGGATCATCAGCTCAgaGATTTGTCGTCTGCGGTCTATGATCCATTTTCACAAGGAACAAGTTCGAACGGTGACCCACGAAGCATGGGAGAGTGCCACGTCACAAATCCAACGGATGGAAACCTTCAAGCCTGGCCTCAAGGATACCCCCTGTATCCTCCTCCTCATATTCAGCATGATATGGTGGGTCCCGACATGCCAGATATGATGCCACCTGGGCAGGTAAACATCCCAATGAACGGTTCACATGGGCAGCCACCCAGCAATGAAGGTGCAGAATATGACTGCAAACCTCCTCTCCAGTG 1004 0.4562 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVFTRYIDLPDQEIDNSVQYPHEQHHSHRRGIQNKEYLRRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLHQQLQMTEEQLRLYEPDPLKMTSMGELESCEKHLVDTLNHVMQRKEYLLSNHLSSFDPSGMQGMPTSFQNVGWLSDGGQNHPQIFDASTPLDHQLRDLSSAVYDPFSQGTSSNGDPRSMGECHVTNPTDGNLQAWPQGYPLYPPPHIQHDMVGPDMPDMMPPGQVNIPMNGSHGQPPSNEGAEYDCKPPLQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02756 330 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 291 - -
Bva06g02756 330 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Bva06g02756 330 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bva06g02756 330 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 291 - -
Bva06g02756 330 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bva06g02756 330 MobiDBLite consensus disorder prediction 302 330 - -
Bva06g02756 330 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g02756 330 Coils Coil 129 149 - -
Bva06g02756 330 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02756 Bva-Chr6 17341524 17345345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02756 1 328 Type I MADS-box Gene Family AT1G22130 57.015 3.67e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g02756 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02756 - - pvu:PHAVU_008G170400g 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02756 06 17341524 17345345 Bva06g02756 06 17341524 17345345 ECH