Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02742 ATGGCAGCTACTATGGATTTCTACAGTAGCGGAGCACTTCATTCAGATCCCTTCAGAGGTGAGCTCATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCAATACTCCCTCACCCTCTCCCTCAGCAGTCTCATCCCCTTGTTCAAATTCGTCTTTACCTTCTACTTCCTATTCACCCTCTTCCAGTTTCAACTACTTCAATTCCTCTCCCCTCCCTACCCAGCCCACTTTCTATGCAGGTGGTTGCTCCCCATCGATGACCCATGTATTTTCCGACGGGTTATCCAACAACCAAAGCTTTATTGGTTTCGGGCAACCAAGTTCTGTTCTTGGGCTAAATCAACTAACCCCAACTCAGATTAGCCAGATCCAAGCTCAGATCCAGCTTCAGAACCAACAAAATATGCCTTGGCAGCAGAATAGCACCCTTAGCTTCCTGAGTCCCAAGCCTATCCTTATGAAGAACGTGGGTGCACCTTCGAAACCCACCAAGCTCTACAGGGGAGTCAGACAACGGCACTGGGGAAAATGGGTTGCTGAGATCAGACTACCAAAGAACCGCACCCGTCTCTGGCTCGGTACCTTCGACACCGCTGAAGAAGCCGCCCTGGCCTATGACAAGGCTGCTTACAAGCTCCGAGGCGACTTCGCTAGGCTCAACTTCCCGAACCTCCGACACCAAGGTTCAAGCGTTGGGGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTTGATGCGAAGCTTCAAGCAATTTGTGAAAGCTTAGCTGATATGCAGAAACAGGGGAAGCCGGAGAAGCCCGCCGGCGCAGCTAAGAGGTCGTCAACAGGGCGGTCAAAGCTGAGTTCCACGGTGGTTGAGCCACAGACTGTGACCCCCTGCGAGGAGCAGTCGGTGATCAGAGAAGTTAATCTGTCGGAGAATAATTACAAGGTCGAAGCTTCCTCTTCTCCGGCGTTGACCGAGAGTGAGACATCTGGTGGTTCTTCACCTTTGTCAGATCTTACTTTTGCCGAATCCAGCGAGCTACAGTGGGATGCAGCTTCTGATAATTTCAGTCTGCTCAAATTCCCCTCTTACGAGATTGATTGGGCATCTCTGTG 1109 0.5068 MAATMDFYSSGALHSDPFRGELMEVLEPFMKSPSNTPSPSPSAVSSPCSNSSLPSTSYSPSSSFNYFNSSPLPTQPTFYAGGCSPSMTHVFSDGLSNNQSFIGFGQPSSVLGLNQLTPTQISQIQAQIQLQNQQNMPWQQNSTLSFLSPKPILMKNVGAPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGEFGEYKPLHSSVDAKLQAICESLADMQKQGKPEKPAGAAKRSSTGRSKLSSTVVEPQTVTPCEEQSVIREVNLSENNYKVEASSSPALTESETSGGSSPLSDLTFAESSELQWDAASDNFSLLKFPSYEIDWASL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02742 369 MobiDBLite consensus disorder prediction 316 336 - -
Bva06g02742 369 CDD AP2 165 225 IPR001471 GO:0003700|GO:0006355
Bva06g02742 369 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 368 - -
Bva06g02742 369 MobiDBLite consensus disorder prediction 31 52 - -
Bva06g02742 369 Gene3D AP2/ERF domain 166 224 IPR036955 GO:0003700|GO:0006355
Bva06g02742 369 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Bva06g02742 369 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Bva06g02742 369 MobiDBLite consensus disorder prediction 277 295 - -
Bva06g02742 369 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Bva06g02742 369 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 368 - -
Bva06g02742 369 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Bva06g02742 369 MobiDBLite consensus disorder prediction 29 52 - -
Bva06g02742 369 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Bva06g02742 369 MobiDBLite consensus disorder prediction 261 295 - -
Bva06g02742 369 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02742 Bva-Chr6 17245660 17247669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02742 1 369 AP2-EREBP Transcription Factor Family AT1G78080 48.980 2.31e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g02742 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02742 K09286 - pvy:116131517 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02190 12 16886597 16888545 Bva06g02742 06 17245660 17247669 BWGD
Bva06g02742 06 17245660 17247669 Bva06g02742 06 17245660 17247669 ECH