Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02732 ATGTCGCACTTCGGAAGATCTGGTCCTCCAGACATCAGAGACACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGTACCACCGCGGATGATCTCTACCCACTCTTCGACAAGTACGGCAAGGTGGTCGATGTCTTCATACCCAGAGACCGAAGgACTGGTGAATCTCGAGGTTTTGCTTTTGTTCGTTATAAGTATGCAGAGGAGGCACAAAAGGCAGTTGACAAGCTTGAtgGAAGAGTCGTTGATGGCAGAGAAATTATGGTTCAATTTGCAAAATATGGACCTAATGCTGAACGAATTCACAAGGGCAGAATAGCGGAATCAACATCGAAGCCGAGAGGGAGGTCAAGAAGCCGCAGCCCTCGTCCTAGGCATAGGGATGAACATAGAGACAGAGACTACAGGAGGAAAAGCCGCAGTCGGAGTAGGGAGAGATATGATCGTGACAGATACCGTGAAAGGGAGAAGGATCATTATCGTCGAAGCAGGAGCCATAGTGTAAGTCCTGATCGTCGCAGAGATCGTGGGAGAGACAGATATGATGGGGAACGTCGTACTCGTAGCGGATCTTATGATAATGCTTCCCCGTCTAGGCGTGAATCCAGTCCTCGTAGGAGCCCATCTCCAGAGAGGAGGACCTCTCAGGGTGGACAGCATGGTGAAGAAAATACTAATGGGAAATCACCTCCCCAAAAGGCTATTTCACCACGTGAGCGATCTGTAGATTCTCGAAGCCCATCTCCACACAGATCTGATGTTGATGAATG 770 0.4909 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYAEEAQKAVDKLDGRVVDGREIMVQFAKYGPNAERIHKGRIAESTSKPRGRSRSRSPRPRHRDEHRDRDYRRKSRSRSRERYDRDRYREREKDHYRRSRSHSVSPDRRRDRGRDRYDGERRTRSGSYDNASPSRRESSPRRSPSPERRTSQGGQHGEENTNGKSPPQKAISPRERSVDSRSPSPHRSDVDE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02732 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE 1 255 - -
Bva06g02732 256 SMART rrm1_1 17 90 IPR000504 GO:0003723
Bva06g02732 256 MobiDBLite consensus disorder prediction 100 256 - -
Bva06g02732 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Bva06g02732 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 255 - -
Bva06g02732 256 SMART rrm2_1 17 90 IPR003954 GO:0003676
Bva06g02732 256 MobiDBLite consensus disorder prediction 125 189 - -
Bva06g02732 256 Gene3D - 4 105 IPR012677 -
Bva06g02732 256 MobiDBLite consensus disorder prediction 238 256 - -
Bva06g02732 256 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Bva06g02732 256 MobiDBLite consensus disorder prediction 100 115 - -
Bva06g02732 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Bva06g02732 256 MobiDBLite consensus disorder prediction 190 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02732 Bva-Chr6 17177486 17181460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02732 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 39.241 1.54e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02732 K12891 - zju:107420854 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02732 06 17177486 17181460 Bva06g02732 06 17177486 17181460 ECH