Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02712 ATGGCTTACCCACATTACCGTTCGCAGTTTGGCGACACAACTTTTACCAAAGTGTTTGTTGGAGGACTTGCTTGGGAGACACCCACTGAAGAAATGCGTAAATACTTCGAGCAGTTCGGAGATATTCTTGAGGCTGTCATCATCACTGATAAGAACACAGGAAAATCCAAGGGCTACGGATTTGTAACTTTCCGTGATCCAGAATCAGCAAGAAGAGCTTGTGTTGATCCAAACCCAGTAATAGATGGAAGACGGGCAAATTGCAATATTGCTTCTTTCGGAAGGCCTCGACCTTCGCCACCCCGAGTGGGGAATGCAGGAAGAAATGTGTTTCAAGCTGGTGGGAGTAGCAGCTATCAAAGAGGCACACCACCGGGTCCCGCGTCGTATGGTGGTGTTCCGGCAGCAGTACCTCCGCCACTACCACCGCCACCACCTCTAATATACCCAAGTTATAGCTACCCAACCTACGCTCCTGATTATGGGTACCACCACCAAGCCCCATTGTACAACCCCCAGATGCAGCAGCAGGCACAATACTATCAGCAAGTTTACGGACCATCATCTCCCACAATGGTTTCACCATATTACTATGGTTATTCAGTACAGGCAACAAGGGGCACATTTTCTGCACCACAACCGCATCGATTACCAGCTGGACCCTCCTATCCATACTACCCTACTGCTACTGCTACACCCATGGAAGGCTCCTTCTCCCCTTATCGTCCACCCCAACCACCAACACGAAGCCATCCCTTTCCCTCTCCTTCTGCTACTGCAGATTCACAGCCTCAGCAGCGTTCCTCCTCAGAAACAGCTGCTGAATCACCAGTAGTTATAACATCAGAAAGTCCAAATACGCAAGGGAagaacta 875 0.4926 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACVDPNPVIDGRRANCNIASFGRPRPSPPRGRNVFQAGGSSSYQRGTPPGPASYGGVPAAVPPPLPPPPPLIYPSYSYPTYAPDYGYHHQAPLYNPQMQQQAQYYQQVYGPSSPTMVSPYYYGYSVQATRGTFSAPQPHRLPAGPSYPYYPTATATPMEGSFSPYRPPQPPTRSHPFPSPSATADSQPQQRSSSETAAESPVVITSESPNTQGKN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02712 287 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bva06g02712 287 CDD RRM_RBM24_RBM38_like 16 91 - -
Bva06g02712 287 MobiDBLite consensus disorder prediction 235 249 - -
Bva06g02712 287 PANTHER - 1 275 - -
Bva06g02712 287 PANTHER GEO13361P1-RELATED 1 275 - -
Bva06g02712 287 MobiDBLite consensus disorder prediction 230 287 - -
Bva06g02712 287 Gene3D - 3 110 IPR012677 -
Bva06g02712 287 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Bva06g02712 287 MobiDBLite consensus disorder prediction 92 127 - -
Bva06g02712 287 MobiDBLite consensus disorder prediction 106 120 - -
Bva06g02712 287 MobiDBLite consensus disorder prediction 250 287 - -
Bva06g02712 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bva06g02712 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02712 Bva-Chr6 17068393 17072189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02712 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 7.38e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02712 K25006 - gmx:100787086 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02223 12 17077133 17080685 Bva06g02712 06 17068393 17072189 BWGD
Bva06g02712 06 17068393 17072189 Bva06g02712 06 17068393 17072189 ECH