Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva06g02712 | ATGGCTTACCCACATTACCGTTCGCAGTTTGGCGACACAACTTTTACCAAAGTGTTTGTTGGAGGACTTGCTTGGGAGACACCCACTGAAGAAATGCGTAAATACTTCGAGCAGTTCGGAGATATTCTTGAGGCTGTCATCATCACTGATAAGAACACAGGAAAATCCAAGGGCTACGGATTTGTAACTTTCCGTGATCCAGAATCAGCAAGAAGAGCTTGTGTTGATCCAAACCCAGTAATAGATGGAAGACGGGCAAATTGCAATATTGCTTCTTTCGGAAGGCCTCGACCTTCGCCACCCCGAGTGGGGAATGCAGGAAGAAATGTGTTTCAAGCTGGTGGGAGTAGCAGCTATCAAAGAGGCACACCACCGGGTCCCGCGTCGTATGGTGGTGTTCCGGCAGCAGTACCTCCGCCACTACCACCGCCACCACCTCTAATATACCCAAGTTATAGCTACCCAACCTACGCTCCTGATTATGGGTACCACCACCAAGCCCCATTGTACAACCCCCAGATGCAGCAGCAGGCACAATACTATCAGCAAGTTTACGGACCATCATCTCCCACAATGGTTTCACCATATTACTATGGTTATTCAGTACAGGCAACAAGGGGCACATTTTCTGCACCACAACCGCATCGATTACCAGCTGGACCCTCCTATCCATACTACCCTACTGCTACTGCTACACCCATGGAAGGCTCCTTCTCCCCTTATCGTCCACCCCAACCACCAACACGAAGCCATCCCTTTCCCTCTCCTTCTGCTACTGCAGATTCACAGCCTCAGCAGCGTTCCTCCTCAGAAACAGCTGCTGAATCACCAGTAGTTATAACATCAGAAAGTCCAAATACGCAAGGGAagaacta | 875 | 0.4926 | MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACVDPNPVIDGRRANCNIASFGRPRPSPPRGRNVFQAGGSSSYQRGTPPGPASYGGVPAAVPPPLPPPPPLIYPSYSYPTYAPDYGYHHQAPLYNPQMQQQAQYYQQVYGPSSPTMVSPYYYGYSVQATRGTFSAPQPHRLPAGPSYPYYPTATATPMEGSFSPYRPPQPPTRSHPFPSPSATADSQPQQRSSSETAAESPVVITSESPNTQGKN | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva06g02712 | 287 | SMART | rrm1_1 | 17 | 89 | IPR000504 | GO:0003723 | |
Bva06g02712 | 287 | CDD | RRM_RBM24_RBM38_like | 16 | 91 | - | - | |
Bva06g02712 | 287 | MobiDBLite | consensus disorder prediction | 235 | 249 | - | - | |
Bva06g02712 | 287 | PANTHER | - | 1 | 275 | - | - | |
Bva06g02712 | 287 | PANTHER | GEO13361P1-RELATED | 1 | 275 | - | - | |
Bva06g02712 | 287 | MobiDBLite | consensus disorder prediction | 230 | 287 | - | - | |
Bva06g02712 | 287 | Gene3D | - | 3 | 110 | IPR012677 | - | |
Bva06g02712 | 287 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 118 | IPR035979 | GO:0003676 | |
Bva06g02712 | 287 | MobiDBLite | consensus disorder prediction | 92 | 127 | - | - | |
Bva06g02712 | 287 | MobiDBLite | consensus disorder prediction | 106 | 120 | - | - | |
Bva06g02712 | 287 | MobiDBLite | consensus disorder prediction | 250 | 287 | - | - | |
Bva06g02712 | 287 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 73 | IPR000504 | GO:0003723 | |
Bva06g02712 | 287 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 93 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva06g02712 | Bva-Chr6 | 17068393 | 17072189 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva06g02712 | 12 | 92 | C2H2 Transcription Factor Family | AT2G19380 | 39.506 | 7.38e-15 | 72.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva06g02712 | K25006 | - | gmx:100787086 | 388.267 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva12g02223 | 12 | 17077133 | 17080685 | Bva06g02712 | 06 | 17068393 | 17072189 | BWGD | |
Bva06g02712 | 06 | 17068393 | 17072189 | Bva06g02712 | 06 | 17068393 | 17072189 | ECH |